Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0880 ATGTCTCAAATTATTAATAACAATTTATTTGAGGAGCAAAATCAGATTCCTACACAAATGGGATTCATTCCTTTCCCAACAAACCTAATTACTTTCCCTTCTTTGGGTTGTAATAATCAATCTTTGAAAGCTTTAAGTTCCATAGCTTCTTCACTTACATCTGAATCAGCTGATTCTACATCAAATCTAACACAAACCCTACTCTCAAGTGCCAATCTTCAAAAACCATCAAGAGAATACCTCACTCCTAGCTTTGGAGGAACTCAATTCCTATCTTTGCATAGATCAAGTGTAAATCCATGGGCAATATTGGGAGGAGTAAGTGATTGCTTGAATGATAGTAGTAAAAGAAGTGGAATAGATCATGATCATAAGTTGGGGGTTTCTAGCATGAAAATGAAGAAAATGAAGGGAAGAAAGAAGGTAAGAGAGCCTAGGTTTTGCTTCAAGACCTTGAGTACTGATTTGGATGTGTTGGATGATGGTTACAAGTGGAGAAAGTATGGACAAAAAGTTGTCAAGAACACACAACATCCCAGAAGCTATTACCGTTGCACACAAGAGAATTGTCATGTAAAGAAGCGCGTGGAGCGCTTAGCGGAGGATCCAAGGATGGTAATAACCACATATGAAGGAAGACATGCACACACTCCATCAAATGATGATCTTCATGACTCTCAAACTCAATCTCATGATTTCTTATGGTAG 708 0.3785 MSQIINNNLFEEQNQIPTQMGFIPFPTNLITFPSLGCNNQSLKALSSIASSLTSESADSTSNLTQTLLSSANLQKPSREYLTPSFGGTQFLSLHRSSVNPWAILGGVSDCLNDSSKRSGIDHDHKLGVSSMKMKKMKGRKKVREPRFCFKTLSTDLDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQENCHVKKRVERLAEDPRMVITTYEGRHAHTPSNDDLHDSQTQSHDFLW* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0880 235 MobiDBLite consensus disorder prediction 213 228 - -
Tpr3g0880 235 ProSiteProfiles WRKY domain profile. 154 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr3g0880 235 MobiDBLite consensus disorder prediction 213 235 - -
Tpr3g0880 235 SUPERFAMILY WRKY DNA-binding domain 154 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr3g0880 235 SMART WRKY_cls 159 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr3g0880 235 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 41 229 - -
Tpr3g0880 235 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 41 229 IPR044810 GO:0003700
Tpr3g0880 235 Pfam WRKY DNA -binding domain 160 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr3g0880 235 Gene3D WRKY domain 145 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0880 Tpr-Chr3 8244631 8246640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0880 128 235 WRKY Transcription Factor Family AT4G39410 74.561 2.02e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tpr3g0880 WRKY 9.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0880 - - pvu:PHAVU_002G266400g 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0880 3 8244631 8246640 Tpr3g0880 3 8244631 8246640 ECH