Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0873 ATGGGATGTGTCAATAGCACGTACACTCCTCCTCGAAATCGAACCAGAAACCGAAACCGGAGTCGCCATGTTGATAGGTTGAAAGATCAGTATGCAAACAGTGATTCTGCAATCAAAACAATTATCACCCATAAAAAGAATTATTCATCTAAAGAATCAGAAGTGGAGAGTAAGAAGAGACCTCTGAGTGTGAAGACTACTACTTCAGGTGACAATACCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGATGATGAGAAGATAAAGGATGTTGCTAGAGATATTGATGATGATAAGTCTGAAGGGGAGGAAGAAGAGAACAAGAATAATAATATTGCAAGCTATGAAGTTAAAGTGGGGGATGGTGAGTGGCCCAAATGGCTGGTTGATAATATCCCTAAAAATGTTTTGGCTACATTGATTCGCAAGACTGCTGATTCCTATGAGAAATTAGGAAAGGTAGGACGTGGAACATATAGTAATGTATATAAAGCTAGAGATAAGGATAGTGGAAAAATTGTTGCTTTGAAGAAGGTAAGATTTGACACTTCAGATTCTGAAAGTATCAAGTTTATGGCAAGAGAGATTATGATAATACAAACGCTGGATCATCCTAATGTCATCAAACTTGAAGGACTAGCAACATCAAGGATGCAATATAGTCTTTATTTAGTCTTTGAATACATGCAATGTGACCTTACTAGAGTTATCTCTCGTCCTGGAGAAAGACTCTCTGAACCACAGATCAAATGTTACATGCAGCAGCTACTTTTGGGACTCCAGCATTGTCATGAGAGGGGAGTCATGCACAGAGATATTAAAGCTTCTAATTTGTTAATAGATAAAAGAGGGGTGCTAAAAATTGCTGATTTTGGACTTGCTAATTCTTTAAAAATTAAACCTAAAGGACCTCTTACAAATAGGGTTGTGACACTTTGGTATAGAGCTCCTGAACTTCTTTTAGGTTCAACTGATTATGATTATAGCATTGATATATGGAGTGTAGGTTGCTTATTGGGTGAGATGTTTGTTGGAAGACCAATTTTGCCTGGAAGGACAGAGATTGAACAGATTCATATGATATACAAAATTTGTGGTTCACCTCCAGAGGATTACTTGACAAAAATGAAGCTAAAGACAAGCTTCCGTCCACCACATCGGTATAAAGCTAGTTTTGAAGAAAATTTTAAGGATTTCCCTTCATCTGCCCTTAATCTCTTGACTACACTGCTTGATTTTGACCCCCAACTTCGTGGTACTGCTGCCTCTGCCCTTGAAAGTCAATTCTTCAAATCTCGTCCATTAGCATGCGACATTTCAGAATTACCGGTAATAATCAACAAAGGTGACAATGAACGATCTCAAAATAAGAGACGCAAAAGGCGCAAAGGTTTGAAAAAAGGGCAACTATCTAAAAGAAGTGCAAGCCATTCAAACCTGTCAGGGATGAACCAAGCTGCTGAACAATTCAAGACAGATTCAGAAGTATCAAAAGAGGAGAAGAGTATAGGACAAAACATGCTAGGACCAGAGACAGGGAATAGTGGAAGCAGCAGCAAATCATCATCAATATTTACTAGCGAAAGGAGCATGAATGCATCTATATCCCCAGTTTTTCTCTCTAGCAGGAAAATATCCCCCAAAACTGAAGGTCATCCTAACGCTCTTAAGAATATAAAGAACTACACACTCTTACAAGCATCTATACTTGATATGATCAACCCCAAAGAAGGCAACGATTTTGGTCAGTTTCGTAGGTCCTTCTCTACATTGGATTTTCGGCTTGATCCAGAGAAGCTGTCAAGTCTCTATAGAGCAAGTAGTAAGTTGGACAAGGAAGTTTGA 1863 0.394 MGCVNSTYTPPRNRTRNRNRSRHVDRLKDQYANSDSAIKTIITHKKNYSSKESEVESKKRPLSVKTTTSGDNTGGGGGGGGGGGGGGGGDDEKIKDVARDIDDDKSEGEEEENKNNNIASYEVKVGDGEWPKWLVDNIPKNVLATLIRKTADSYEKLGKVGRGTYSNVYKARDKDSGKIVALKKVRFDTSDSESIKFMAREIMIIQTLDHPNVIKLEGLATSRMQYSLYLVFEYMQCDLTRVISRPGERLSEPQIKCYMQQLLLGLQHCHERGVMHRDIKASNLLIDKRGVLKIADFGLANSLKIKPKGPLTNRVVTLWYRAPELLLGSTDYDYSIDIWSVGCLLGEMFVGRPILPGRTEIEQIHMIYKICGSPPEDYLTKMKLKTSFRPPHRYKASFEENFKDFPSSALNLLTTLLDFDPQLRGTAASALESQFFKSRPLACDISELPVIINKGDNERSQNKRRKRRKGLKKGQLSKRSASHSNLSGMNQAAEQFKTDSEVSKEEKSIGQNMLGPETGNSGSSSKSSSIFTSERSMNASISPVFLSSRKISPKTEGHPNALKNIKNYTLLQASILDMINPKEGNDFGQFRRSFSTLDFRLDPEKLSSLYRASSKLDKEV* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0873 620 MobiDBLite consensus disorder prediction 454 534 - -
Tpr3g0873 620 MobiDBLite consensus disorder prediction 513 534 - -
Tpr3g0873 620 ProSiteProfiles Protein kinase domain profile. 154 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g0873 620 MobiDBLite consensus disorder prediction 477 497 - -
Tpr3g0873 620 SUPERFAMILY Protein kinase-like (PK-like) 148 441 IPR011009 -
Tpr3g0873 620 Gene3D Phosphorylase Kinase; domain 1 143 236 - -
Tpr3g0873 620 SMART serkin_6 154 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g0873 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Tpr3g0873 620 PANTHER CELL DIVISION PROTEIN KINASE 109 576 - -
Tpr3g0873 620 MobiDBLite consensus disorder prediction 1 91 - -
Tpr3g0873 620 MobiDBLite consensus disorder prediction 461 476 - -
Tpr3g0873 620 ProSitePatterns Protein kinases ATP-binding region signature. 160 183 IPR017441 GO:0005524
Tpr3g0873 620 Pfam Protein kinase domain 154 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g0873 620 Gene3D Transferase(Phosphotransferase) domain 1 237 476 - -
Tpr3g0873 620 PANTHER CYCLIN-DEPENDENT KINASE 109 576 - -
Tpr3g0873 620 MobiDBLite consensus disorder prediction 45 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0873 Tpr-Chr3 8200735 8205341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0873 149 494 Core Cell Cycle Gene Families AT5G10270 42.623 2.75e-94 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tpr3g0873 Pkinase 1.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0873 K08819 - gmx:102667260 692.96