Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0868 ATGAGTTTCCGTATCAAAGTTGGTATTCAAGAGTTTTTGCATGAAGTGTTATTGAAATTTGAAAAGGTGGCAAATTATAGAGAGAAAGGAAAAGAGCTTGACAACAATATTGAAGAAGAAGGAGCAGAAGGACAAGATTTAAGGTTGTCAATGCCAATGATGTTTCCTGGTTTTCATAGAGAAGGAGAAATGTCAGCTATGGTGTCTGCTTTAACACATGTGATATGTGGTGATCAGAACAATGATGATTTTAGTGTTCTGAATCAGAATATGAATCAAACTGCATTTGATCAAGGTGATGGTATAGATATCAACCCTTTTGTTTCGGCAACAACATCTTCAACTTCTTTATCTTATGGTGATAGTTCTGCTCTCAAGAGAAGACGAGAAGATGGTGGATTCTTTCATAATTCATCCTCTGCTTTTCCCCCAAATAAACACCAAGAATGTTCGAGCAACTGGACAAACACAATAACAACAGAAAGGAGTCAAATATCAGAGCCTATATATGAATACAGAATAGACAATAACAATGTGAAAAATGAAGATCAACCAAAAAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGAAAATGGGCTGCAGAGATAAGAGATCCATTCAAAGCTACAAGAGTATGGTTAGGAACATTTGAAACAGCTGAAGATGCAGCTAAAGCATATGATCAAGCTGCATTGCGTTTTAGAGGCAACAAAGCAAAACTCAACTTTCCTGAAAATGTTAGGCTCAAGCAACAATCTTTGGTTAATCCAATACAATCTAGCATTGATCCAAGGGTTCAGGGTGAAAGTCTGCAAGGTTCAAATAGTTCAAAAAAGTTTTATGGTCAAAACTTTCCTGTGAGATTATATGATCAGATTACTATGTCATCACCAAATGAGATGGCTTCTCTTCAAACTTCAATGTCACCATCAGCTTCATATTCTTCTTCTACTACTACTATTGCTTCTTCTTTTAGTTCACCACAGACAACTTCGATTCCTCCGGTTTATACTACCGATTTTCCAGCATGGTCTTCTGGTTTTAACTCCTCTCCCTCAGGCTAA 1068 0.3717 MSFRIKVGIQEFLHEVLLKFEKVANYREKGKELDNNIEEEGAEGQDLRLSMPMMFPGFHREGEMSAMVSALTHVICGDQNNDDFSVLNQNMNQTAFDQGDGIDINPFVSATTSSTSLSYGDSSALKRRREDGGFFHNSSSAFPPNKHQECSSNWTNTITTERSQISEPIYEYRIDNNNVKNEDQPKRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAAKAYDQAALRFRGNKAKLNFPENVRLKQQSLVNPIQSSIDPRVQGESLQGSNSSKKFYGQNFPVRLYDQITMSSPNEMASLQTSMSPSASYSSSTTTIASSFSSPQTTSIPPVYTTDFPAWSSGFNSSPSG* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0868 355 CDD AP2 188 247 IPR001471 GO:0003700|GO:0006355
Tpr3g0868 355 Coils Coil 23 43 - -
Tpr3g0868 355 ProSiteProfiles AP2/ERF domain profile. 188 245 IPR001471 GO:0003700|GO:0006355
Tpr3g0868 355 PANTHER DNA-BINDING DOMAIN PROTEIN 25 351 - -
Tpr3g0868 355 PRINTS Ethylene responsive element binding protein signature 189 200 IPR001471 GO:0003700|GO:0006355
Tpr3g0868 355 PRINTS Ethylene responsive element binding protein signature 211 227 IPR001471 GO:0003700|GO:0006355
Tpr3g0868 355 SMART rav1_2 188 251 IPR001471 GO:0003700|GO:0006355
Tpr3g0868 355 Pfam AP2 domain 188 237 IPR001471 GO:0003700|GO:0006355
Tpr3g0868 355 Gene3D AP2/ERF domain 187 247 IPR036955 GO:0003700|GO:0006355
Tpr3g0868 355 SUPERFAMILY DNA-binding domain 188 246 IPR016177 GO:0003677
Tpr3g0868 355 PANTHER DNA-BINDING DOMAIN 25 351 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0868 Tpr-Chr3 8153843 8155385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0868 181 249 AP2-EREBP Transcription Factor Family AT5G13330 78.571 1.47e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr3g0868 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0868 - - mtr:MTR_8g092460 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0868 3 8153843 8155385 Tpr3g0868 3 8153843 8155385 ECH
Tpr3g0868 3 8153843 8155385 Tpr3g3061 3 33475334 33477778 ECH