Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0865 ATGGATTTCGACGAGTACGAGTACTTGGAGAAGACGGTGGAGGACCTACCGGAAGACAAAGATTCATCCAAAAAGAAGAAGACCGACAGCGCCGACACTAAATCCGAGAGAACTTACCGGAAACGCGACGTCGACGACGATCTAAACGGAGAAGACAGACGTAGCAAGAGGTCACGCGGCGACGACGAGAATGGCTCTAAAAAGGATCGCGATAGAGATAGAGACCGTGAACGTGAGAGATCTTCCGGCAGGCATAGAGAGAGGGAGAGAGACGGAGAGAGAGGTAGCAGAGAGAAAGAGAGGGAGAAGGACGGAGAGAGAGGTGGTAGAGACAAAGAGAGGGATAAAGAGAGAGAAAAGGAGAGGGAGAGAAGAGATAAGGAAAGGGAAAAGGAACGGGAGAGAAGAGAGAAGGAACGAGAGAGAGAAAAGGAGGAGAAAGAGAGACCAAGGAGGAGTTCGAGTCGTCCCGAGAGAGATAGAGGAGAAAGAGTTGAGAGAGAGCGAGATTTTGAAAATAGAGATGGCAGGAGATTCAGGGATAAGAAAGAGAATGTGGAACCTGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCTTTAAAAGCAACGGAGAGAGATGTATACGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCGATGGCAATTGCTCTCTCCGGACAACTACTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAGGCGGAAAAAAATCTTGTTCAATCTAATGCTTCCAGTGGAGCTGCTGGTGTAGTAGGACCATATGGAGCAGTGGACAGAAAATTATATGTGGGGAATCTTCACTTCAACATGACCGAGGCTAATCTCCGAGAGATTTTTGAGCCATTTGGTCAGATTGAAGTTGTACAACTGCCTCTTGACATGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTGCAATTTGCCCATCTCGAACATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTAGATATTGCTGGCAGGACTATAAAGGTTTCATCTGTTACAGATCATGTTGGAAGTCAAGATACAACTGCAAAATCTGCAGATTTTGATGATGATGAAGGTGGATTGACTTTAAATGCCCACTCGAGGGCATTGCTTATGCAAAGGTTGGCTGGTGCTGACGTTCCCACAAGCATTGTGAATGGGTCGGTTCCTGTTCAGCAGGCTTTTAACTTTCCTATTGGTAACCCAGGTGGTATACCCACACCAGGTCTACCACAAATTATGCCTACTCCTGTGGTTGAACCAGTAGGAATCCCCAGCGAGTGCTTATTATTGAAGAATATGTTTGATCCAAGCACCGAGACGGAACCAGATTTCGATATCGACATTAAAGAGGATGTAGAGGAAGAGTGTTCTAAATACGGACGGGTGAAGCATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTACTTGCAGTTTGAAACAGTGGAAGCATCAAGTGCTGCGCAACGAGCAATGCACATGAGATGGTTTGCACGCAGGTTGATTACAGCTATCTTCATGGAACCACATTTATATGAAGCCAAGTTTAAGGGGGAATTGTGA 1677 0.4568 MDFDEYEYLEKTVEDLPEDKDSSKKKKTDSADTKSERTYRKRDVDDDLNGEDRRSKRSRGDDENGSKKDRDRDRDRERERSSGRHRERERDGERGSREKEREKDGERGGRDKERDKEREKERERRDKEREKERERREKEREREKEEKERPRRSSSRPERDRGERVERERDFENRDGRRFRDKKENVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAGVVGPYGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLDIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLTLNAHSRALLMQRLAGADVPTSIVNGSVPVQQAFNFPIGNPGGIPTPGLPQIMPTPVVEPVGIPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEASSAAQRAMHMRWFARRLITAIFMEPHLYEAKFKGEL* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0865 558 CDD RRM3_RBM39_like 463 545 - -
Tpr3g0865 558 CDD RRM1_RBM39_like 198 270 - -
Tpr3g0865 558 PANTHER CC1-LIKE SPLICING FACTOR 1 557 - -
Tpr3g0865 558 SMART rrm1_1 465 542 IPR000504 GO:0003723
Tpr3g0865 558 SMART rrm1_1 300 373 IPR000504 GO:0003723
Tpr3g0865 558 SMART rrm1_1 198 270 IPR000504 GO:0003723
Tpr3g0865 558 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 557 - -
Tpr3g0865 558 Gene3D - 190 284 IPR012677 -
Tpr3g0865 558 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 266 IPR000504 GO:0003723
Tpr3g0865 558 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 487 540 IPR000504 GO:0003723
Tpr3g0865 558 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 371 IPR000504 GO:0003723
Tpr3g0865 558 TIGRFAM SF-CC1: splicing factor, CC1-like family 76 554 IPR006509 GO:0003723|GO:0005634|GO:0006397
Tpr3g0865 558 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 274 IPR000504 GO:0003723
Tpr3g0865 558 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 377 IPR000504 GO:0003723
Tpr3g0865 558 Gene3D - 459 557 IPR012677 -
Tpr3g0865 558 Coils Coil 110 149 - -
Tpr3g0865 558 MobiDBLite consensus disorder prediction 13 196 - -
Tpr3g0865 558 SUPERFAMILY RNA-binding domain, RBD 299 545 IPR035979 GO:0003676
Tpr3g0865 558 MobiDBLite consensus disorder prediction 1 196 - -
Tpr3g0865 558 Gene3D - 295 391 IPR012677 -
Tpr3g0865 558 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 392 482 IPR029123 -
Tpr3g0865 558 SUPERFAMILY RNA-binding domain, RBD 190 281 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0865 Tpr-Chr3 8132069 8138036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0865 271 372 Eukaryotic Initiation Factors Gene Family AT4G34110 31.068 2.51e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0865 K13091 - gmx:100793461 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0865 3 8132069 8138036 Tpr3g3063 3 33492750 33501100 ECH
Tpr3g0865 3 8132069 8138036 Tpr3g0865 3 8132069 8138036 ECH
Tpr3g0865 3 8132069 8138036 Tpr3g3091 3 34003792 34012018 PCT