Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0851 ATGTATGCTTCTACTTCCTTTACTTCAAAACTCATCAATGAGCTTCTTGTGGAATCTCACACAAGAAGGTTGCTCTTCCAAGACACAATTGAACATCGATCACTCAAAATCGACTCCCGTGTTTTCACAAACAACGACAATTCAACCGACTCAAATTTCGGTGCTCGTGAATTTGATTCAGATGTTGTGAAGATTATTGCAGTCTTACTATGTTGTTTTATTTGCTTGCTTGCATTAAACTCCATCATAAGGTGTGTCTTAAGGTTTTCAAGTGTAGCTATCAACAATGAATCTTTTTCGAGTTCGAGTAGCAACCCTTTACCTCAATTGGTCAACAAAGGAATCAAGAAGAAAGTTCTCAAGAGATTCCCAACAATGAGATATTCAACTGAGTTGAAACTGCCAAGTTTGGATACAGAGTGTATGATATGTCTCTCAGAGTTCGCAAAGGGTGAAAAGGTGCGCATTTTACCTAAATGCAACCATGGTTTTCATGTTCGTTGCATTGATAGATGGCTAAAGGAACACTCGTCATGTCCCAAGTGTAGACAGTGCCTTCTTGAAACTTGTCGAAAGATTGGTGGATCGCAGGTGCAACCAATTGTGTTGCCGGTTCAAGAAACCATTATAAGGATCCAACCACTAGAGCCTGAAGCTTTGGAACATAACTATAGGGAACAAATATAA 687 0.393 MYASTSFTSKLINELLVESHTRRLLFQDTIEHRSLKIDSRVFTNNDNSTDSNFGAREFDSDVVKIIAVLLCCFICLLALNSIIRCVLRFSSVAINNESFSSSSSNPLPQLVNKGIKKKVLKRFPTMRYSTELKLPSLDTECMICLSEFAKGEKVRILPKCNHGFHVRCIDRWLKEHSSCPKCRQCLLETCRKIGGSQVQPIVLPVQETIIRIQPLEPEALEHNYREQI* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0851 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 187 IPR013083 -
Tpr3g0851 228 CDD RING-H2_PA-TM-RING 140 183 - -
Tpr3g0851 228 Pfam Ring finger domain 140 183 IPR001841 -
Tpr3g0851 228 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Tpr3g0851 228 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 227 - -
Tpr3g0851 228 PANTHER RING-H2 FINGER PROTEIN ATL78 1 227 IPR044602 GO:0016567|GO:0016740
Tpr3g0851 228 SMART ring_2 141 182 IPR001841 -
Tpr3g0851 228 SUPERFAMILY RING/U-box 119 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0851 Tpr-Chr3 8014183 8015021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0851 58 187 C3H Transcription Factor Family AT3G10910 49.624 1.68e-39 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0851 K19040 - gmx:100780127 293.508