Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0849 ATGTATGCTTCTACTTCCTTTACTTCACAACTCATCAATGAGCTTCTTGTGGAATCTCACACAAGAAGGTTACTCTTCCAAGACACAATTGATCATCAATCACCAACCATCTCCCCTACATTAACAAACAAACATAATTCAACCGACTCATATTTTGGAGTTCATGAATTAGATTCAAATGTTGTGATGATACTTGCAGTCCTATTATGTGCTCTTATTTGCTCACTTGCATTAAACTCCATCATAAGGTGTGCCTTAAGGTTTTCAAACATAGACATCAACAATGACGATTCTTCGAGTTCAAGTAACAATTCTTCACAAAAATTGGCCAACAAAGGAATAAAAAAGAAAGCTCTCAAAACATTCCCAACGGTGAGCTATTCGACTGAGTTGAAACTACCTAATTTGGATACAGAGTGTGTGATATGTATCTCGGAGTTCACAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAACCATGGTTTTCATGTTTGTTGCATTGACAAATGGCTAAAGGAACACTCGTCATGTCCCAAGTGTAGACAATGTCTTCTTGAAACTTGTCAAAAGATTGTTGGGTCGCAGGTACAAGCAGTTGTGTTGCCGGTGCCAGAAACCATTATAAGGATTCAACCACTAGAGCATGAAGCTTTAGAACGTAACTACCTTCCTTAA 678 0.3835 MYASTSFTSQLINELLVESHTRRLLFQDTIDHQSPTISPTLTNKHNSTDSYFGVHELDSNVVMILAVLLCALICSLALNSIIRCALRFSNIDINNDDSSSSSNNSSQKLANKGIKKKALKTFPTVSYSTELKLPNLDTECVICISEFTKGEKVRILPKCNHGFHVCCIDKWLKEHSSCPKCRQCLLETCQKIVGSQVQAVVLPVPETIIRIQPLEHEALERNYLP* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0849 225 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Tpr3g0849 225 SMART ring_2 140 181 IPR001841 -
Tpr3g0849 225 SUPERFAMILY RING/U-box 118 187 - -
Tpr3g0849 225 Pfam Ring finger domain 139 182 IPR001841 -
Tpr3g0849 225 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 223 - -
Tpr3g0849 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 186 IPR013083 -
Tpr3g0849 225 PANTHER RING-H2 FINGER PROTEIN ATL78 1 223 IPR044602 GO:0016567|GO:0016740
Tpr3g0849 225 CDD RING-H2_PA-TM-RING 139 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0849 Tpr-Chr3 7996613 7997437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0849 44 186 C3H Transcription Factor Family AT3G10910 50.685 1.67e-43 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0849 K19040 - gmx:100780127 304.679