Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0838 ATGGTTAGAGACGATTTATACATCACCGTTCCGAGTTTATTCCGGTGTCCAATTTCACTCGACGTCATGAAATCTCCGGTGAGTCTCTGCACCGGAGTTACTTACGACCGTTCCAGTATCCAACGCTGGCTTGATAACGGTAATAACACTTGTCCCGCCACTATGCAAATTCTTCAAACCAAAGATTTCGTTCCGAACCGGACGTTACAGAGACTCATTCAGATCTGGTCCGATTCGGTTCGTCACCGAGTTGACTCGACCGATTCTATTATATCTAATGAATCGGTTGATAAACGTGATCAATTACTTGTTGCTATTACTGATTTAGAGTCTGGTAGTGAGAATCGGTTTCAGTCGCTTGAGAAAATTGTGCGGTTCGCTAAAGATTCTGAAGAGAATTGTGTTTTTCTTGCTAAAACGGAAGGATTCGTTGCTTTGTTGGTAGGTTTTCTTGATAATGTTGATGGTGGAGTTGAACGGAGTGTTGAATTGCTTGAACAAGTTGTTGTTGCGTTGGATTTGGTTTTAAGTAAAATTGAGAATCGTGACTCGATTTTGAAGAGCCAGAAGGAGAAGGAGTTACAGAGTTTAGATTCTCTGCTTCTTGTTTTGAAACAAGGAAGTAGTGAATCGAAGATCGCTTCGGTTAGTGTTTTGAAATCCATAGCGGTTGATACAGAATCGAAGCTTCTAGTAGCGGAGAAAGAAGGTTTAGTATCAGAATTGCTTAATCTAATCACGCCGGAGAATGATCCGAATCTAATCGAGAACGCACTTTCGTGTCTGATTGCAATCTCAACACCGAAACGGAACAAATCGAAACTAATTCAACTCGGAGCAGTGAAGGTATTCTCGAAGCTTCTAACGTCTCCGTCTAATTTATGCGTTTCAGTGACGGAAAAGTTACTGAAGCTTCTCGAAACGGTGTCATCAATGAAGGAAGGGAGATCGGAGATATGTGAAGAGCCGTCGTGCGTGGCGGCGATAGTAAACAAGGTTTTAAAAGTGTCCACCGTGGCAACGGAACACGCGGTTACGATACTGTGGAGTGTTTGTTATTTATTTCGTGATCAAAAAGCACAAGAAGCAGTTACGAAAGCTAATGGATTAACGAAGATTTTGCTTCTGATGCAGAGCAATTGCACGCCACAAGTTCGTCAAATGTCTGTAGATTTACTTAAGATATTTCGTGTTAATTCTAAGTCGTGTCTTTCTTCGTATGATACTAAAACCACTCATATTATGCCATTTTGA 1254 0.4131 MVRDDLYITVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQILQTKDFVPNRTLQRLIQIWSDSVRHRVDSTDSIISNESVDKRDQLLVAITDLESGSENRFQSLEKIVRFAKDSEENCVFLAKTEGFVALLVGFLDNVDGGVERSVELLEQVVVALDLVLSKIENRDSILKSQKEKELQSLDSLLLVLKQGSSESKIASVSVLKSIAVDTESKLLVAEKEGLVSELLNLITPENDPNLIENALSCLIAISTPKRNKSKLIQLGAVKVFSKLLTSPSNLCVSVTEKLLKLLETVSSMKEGRSEICEEPSCVAAIVNKVLKVSTVATEHAVTILWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCTPQVRQMSVDLLKIFRVNSKSCLSSYDTKTTHIMPF* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0838 417 Gene3D - 83 407 IPR011989 -
Tpr3g0838 417 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 417 - -
Tpr3g0838 417 PANTHER WDSAM1 PROTEIN 4 417 IPR045185 GO:0061630
Tpr3g0838 417 SUPERFAMILY RING/U-box 5 78 - -
Tpr3g0838 417 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Tpr3g0838 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 82 IPR013083 -
Tpr3g0838 417 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Tpr3g0838 417 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Tpr3g0838 417 CDD RING-Ubox_PUB 14 56 IPR045210 -
Tpr3g0838 417 SUPERFAMILY ARM repeat 110 399 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0838 Tpr-Chr3 7913574 7915304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0838 1 417 U-box Gene Family AT5G64660 55.140 1.99e-145 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0838 - - cam:101496984 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0838 3 7913574 7915304 Tpr3g0838 3 7913574 7915304 ECH
Tpr3g3122 3 34334038 34335534 Tpr3g0838 3 7913574 7915304 ECH
Tpr3g0838 3 7913574 7915304 Tpr3g3122 3 34334038 34335534 PCT