Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0837 ATGCTGAGTTCTGATGATGATGGAGATATTGATGTATTCTATGACTCATTGGATAGTTTATCAGGTCAAGATTCTGTTTTAGCCGAATTAGAGGTTGGTTTTGAAAGGCGTCGTTGTGATGATTATGATAAAATTTGGTTGAATGAGCTTGTTAGCGTGAAGGAAAGAAGGGAACGTTTTCTGAAGGGTATGTGTTTAGTTGATAATTTTTCGAAGATTTGTTTACAAGAGAGAATTATGAGCTTTGATGATTCATCGATCACCTCGGGGATGGAGAGGATCGCGGAGTGTAGTGGAGCAGTCTCAAATGCATGCATTTCTCCTTCTGATGAATTATCAGAGAAGGTTGATTTCTCTGGATGGAATGCAGCTTCCGAAGCTGAGGTCTTGTTTAAAGAAATTAAAGGGCGTCGCGAGGATGAAGTGGATGCAAGTTTTCAAGAGTACAGCCAGAGAGAAGGTGAGGCACAGGAAGAATTTCGGCATTTCGATAAGGTTAAAGCTAATAGAAAAAATTGGTGGAAGCTCTTTGTAAACATAAGGAAAAACGACGAAGGAAAAGTTAAATCAAAGTTGAATACAACGGCAAGTAAAACTCGTAGAATAAAAGTAAGACAGAATAAAAAGAGGTGGCTTGAGTTCAGTGAGCTATACATTGGACAAGAGATTAAAGCTCACAAAGGATTAATCTGGACTATGAAATTCAGTCCTAATGGTAAGTATTTAGCTAGTGGAGGTGAAGATGGTGTTGTGCGCATATGGCGCATTATGTCACGTGACAAAAGCCCGTCTTTTATTTTCATTCAAAATGATGTTTTTCAAATTGATGAATCGCCGCTGCAAGAATTGTTTGGTCATTCCAGTGATATCTTGGATTTGGCTTGGTCTAATTCAGATATTCTTCTCTCGTCTTCTATGGATAAAACCGTCTGCTGTTGGAAAATCGGCTGTGATCAATGTCTAAGTGTTTTCCCTCACAAAGACTTTGTTACGTGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATCAGTGGATCGATAGATGGTAAAGTTCGAATATGGGGGATACGTGAAGAGAGGGTTATTGACTGGGCAGATATACGAGATGTCATAAGTGCTATAAGTTACCAACAAGACGGGAAAGGATTTGTAGTTGGTTCTGTTACAGGCACGTGCCGTTTTTATGTTGCTTCAGGAAAATATTTCAAGTTTGAGGCACAGATAGGTATCTGCGGAAAGAAGAAAGCGTCAGGCAATAAGATTACCGGCATTCAGTTCTTTCAAAACAACAGGCAGAGAATTATGGTCACATCAGAAGATTCCAAAATTCACATATTGGATGGAATTGAGATTGTTCAGAAATACAAAGGCCTTCCGCGATCGGGAAGTCAGATGTCTGGTTCATTTACATCAAGTGGGAAACATATAATTTCAGTTGGAGGGGACTCGCGCGTGTATATATGGAACTTCAATGACTCCAAAAGTGCTTCTTCGAAAAAAACAAAATCCGAGCATTCTTGTGAGTATTTTTCTTTCAAGGGTGTAACGGTTGCAATACCTTGGTCAGGCGCGAAAGCAGAAGATAAAAGTGACTATAGAAATAACTTTTCTCACCATTCTTCAGAAATGAAAACCAAGCTAGAGTTTAGTTCTGAGGTTAAAGATACAGAACAACGTTTTTCTCTCGGTAATTGGTTCTTCATCGATGGTACATGTCGTGGTTCTATGACATGGCCCGAGGAGAAACTTCCAACATGGGATTTACCTCTTGTAAAAGATGAATATGATCGCAAAAAATTATATCGCGAAGATAGTAGCCATGACAGGAATAATATATCAGAAACATGGGGTCTAACAATAGTGGCTGCTGGTAGTGATGGAACTATCAAAACATTCCACAATTTTGGTTTGCCTGTTAGGCTTTAG 1929 0.3909 MLSSDDDGDIDVFYDSLDSLSGQDSVLAELEVGFERRRCDDYDKIWLNELVSVKERRERFLKGMCLVDNFSKICLQERIMSFDDSSITSGMERIAECSGAVSNACISPSDELSEKVDFSGWNAASEAEVLFKEIKGRREDEVDASFQEYSQREGEAQEEFRHFDKVKANRKNWWKLFVNIRKNDEGKVKSKLNTTASKTRRIKVRQNKKRWLEFSELYIGQEIKAHKGLIWTMKFSPNGKYLASGGEDGVVRIWRIMSRDKSPSFIFIQNDVFQIDESPLQELFGHSSDILDLAWSNSDILLSSSMDKTVCCWKIGCDQCLSVFPHKDFVTCIQFNPVDENYFISGSIDGKVRIWGIREERVIDWADIRDVISAISYQQDGKGFVVGSVTGTCRFYVASGKYFKFEAQIGICGKKKASGNKITGIQFFQNNRQRIMVTSEDSKIHILDGIEIVQKYKGLPRSGSQMSGSFTSSGKHIISVGGDSRVYIWNFNDSKSASSKKTKSEHSCEYFSFKGVTVAIPWSGAKAEDKSDYRNNFSHHSSEMKTKLEFSSEVKDTEQRFSLGNWFFIDGTCRGSMTWPEEKLPTWDLPLVKDEYDRKKLYREDSSHDRNNISETWGLTIVAAGSDGTIKTFHNFGLPVRL* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0837 642 PRINTS G protein beta WD-40 repeat signature 242 256 IPR020472 -
Tpr3g0837 642 PRINTS G protein beta WD-40 repeat signature 301 315 IPR020472 -
Tpr3g0837 642 PRINTS G protein beta WD-40 repeat signature 343 357 IPR020472 -
Tpr3g0837 642 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 315 IPR001680 GO:0005515
Tpr3g0837 642 SMART WD40_4 276 314 IPR001680 GO:0005515
Tpr3g0837 642 SMART WD40_4 216 255 IPR001680 GO:0005515
Tpr3g0837 642 SMART WD40_4 358 397 IPR001680 GO:0005515
Tpr3g0837 642 SMART WD40_4 317 356 IPR001680 GO:0005515
Tpr3g0837 642 SMART WD40_4 449 490 IPR001680 GO:0005515
Tpr3g0837 642 SMART WD40_4 408 448 IPR001680 GO:0005515
Tpr3g0837 642 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 264 IPR001680 GO:0005515
Tpr3g0837 642 SUPERFAMILY WD40 repeat-like 218 632 IPR036322 GO:0005515
Tpr3g0837 642 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 358 - -
Tpr3g0837 642 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 223 256 - -
Tpr3g0837 642 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 365 IPR001680 GO:0005515
Tpr3g0837 642 PANTHER WD REPEAT DOMAIN 44 260 642 IPR040324 -
Tpr3g0837 642 PANTHER WD REPEAT DOMAIN 44 6 262 IPR040324 -
Tpr3g0837 642 Gene3D - 213 520 IPR015943 GO:0005515
Tpr3g0837 642 Pfam WD domain, G-beta repeat 278 314 IPR001680 GO:0005515
Tpr3g0837 642 Pfam WD domain, G-beta repeat 319 355 IPR001680 GO:0005515
Tpr3g0837 642 Pfam WD domain, G-beta repeat 222 254 IPR001680 GO:0005515
Tpr3g0837 642 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 260 642 - -
Tpr3g0837 642 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 6 262 - -
Tpr3g0837 642 ProSiteProfiles Trp-Asp (WD) repeats profile. 469 499 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0837 Tpr-Chr3 7897414 7901182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0837 218 387 Miscellaneous Gene Families AT5G08390 25.287 3.71e-07 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0837 3 7897414 7901182 Tpr3g0837 3 7897414 7901182 ECH
Tpr3g0837 3 7897414 7901182 Tpr3g3125 3 34362946 34367357 PCT