Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0832 ATGAGCGGAAGTGGCAGAAAGCTATCATCAAACTGGGATTCAAGAGATGAACCTGAGTTTGCATCCGAGAGTGTTACTAATAGCAATAGTTCAAGGTTTTTGGAAAGAAATGATATGCTAAACTCCAGAATGGGATTTTCACGCATGGAACCTTTTTCTGGAGGCAGAGGTTCAAATAAGGATGATGTTGGGAGCGAAGACTACAAAGTTTTGGATGCTACAAATGCACAAGATACTGATGGAAGTTACAATATGAAAACGTCTCCAGGGTTTGAGGAATGGAAAATTAGGAAGCATAGTCAATATTCAAAAAATGATTACGGCAGGAGAAGTAGGAGCCAGAGCCGGAGTCCTTCACGTGGTTTTAGGTATTCAGATGTCGATGATCGGAACAGAATTAGGGCTGGCAGATCGACAAAACCTTGTAGAGATTTTGCTGTTGGGAACTGTAGAAGAGGCAGCCATTGCCATTTCCTTCACCATGATAACCAAAGTTGTGAGGATAGCAGGGAAAGTAGACACAGGCAAGATGGACCCAGATATTCTAATCCCCGTGAGAGTGGGGATTATTCTATTGCAGATCGAAGATCTAATGAAGCTTGTATTAATTTTGAAAAGGGAAGGTGTAGAACGGGAGAATCATGCAGGTTTGTCCATCATGGCAAATCCAATGGGTTTGATAAAGTTTCCACATATGAATCATCTAGGGAAAGGGAAGTTGATAGAAGACACATGGATAGTTCATTCAAGCAGGAGGGCCAACACTATCCAAACCACAAGAGTAATATTCCTTGCAAATATTTTGCTCTTGGAAATTGTCTTTACGGTAAAGATTGTAGGTTTTCTCATGATAGACACTCATTTACTAGCCCTAGATTAAGGGATGATAGATCAAGGAGTAATCAAGGTGAAGATCAAGTGTTGGATAGACAAAAAATGAGCGATTCAGTTACTCCTAATGAAAGGCCAAGGGATGATAGATGGGTTTCAGATGGCAGTATGGCTGGTGTAGATAAAGTTTGGGATGGTCCAAAGCAAAATGATTTAGTCGCTGTCTCTGATACTGCAAAGCTGGTTGAAGACAAAAAAATTATAAGCGCTCCCGAACCTGGATTAATGACTTGGCCAATGAATGATGGATTGGATTATAGCTTAAACCAGAACAGAGTGCATAATGAATCACCGTTTTCAATTGTTTCAATTGATAAGAAAGAAGCCAACTGTCGGACTGAAGAAAATGCAGTTGACAACATTCTCCTTTCTCAGTCACTAGGTGGAGCTGGAGGCATTTGGCCTGGTGATGAAAAAATGTCTCCTGATTGGAATTATGGTTCGAGATCATCCAGCCATATTAAAGACGAGGATGGGCATAATAAGCATCAAGTTGCTCGAGGTCAAGGACTAAATCAGAATGCTCAGAACATAACTGCTTCCCACGTGGTTGGACAGAGTCAAGCAACAGTTTCCATTGTTCCTCCGAGAGCAAGAATTATTGAAGGTATACAGAACCAGGAACTCTTCACTGAGAAAAACTACATTGTAGAACCAAATATCACGAATGCAAGCCTATCACACACCAGTTCAGTAAATACTCCAACTCAGAACGTAGTCAGCAAAGAACAACTTGCTCAACTTAGCTGCCTCTCGGCCTCTCTCGCACATATCCTTGGAACTAATCATCAGCTTTCACAACTTCATTCTACTTTAAATTTTTGTGACGCAAAGGACACTCTCGTCGTAAACAAAATTGAAGGGTCTGGTAATCCTGTTTCCATGACATTCATCAAACCAGATTCTGCTATTGGATTGAAGCAGTATGATCCAATCCATGATAGTATGGAGCCCAATAATATCAATGCAAGTGGGGTCTCTCCAACCTTTTCTCCCAGTATGAAGATTGCAAAAAATGCAGTGGTAATTCCACCACTGTTATCTAACCCGGGAATTTTTTTTGACGATTCTTGTAAAAAGGAGACTAACAAAATGGTAGCTGAACTAAAGGCAAGCTCTCAAGCTGAAAATAAAATTACAGAAGAAAATAGTCCTTTGGAAAACATGGACCAAGATGATGGACCTGATGAGGCCAAGAAAACAAAGGATGTAAAGGGGATTCGTGCATTTAAATTTTCATTGGTAGAGCTCACTAAGGAGATTCTGAAACCAACATGGAAAGATGGTAAAATCACCAAAGAAGATTATAAAGCAATTGTGAAGAAAGTTACTGAGAAAGTAACCGGTACAGTACCGCGGGTACATATTCCTCAGACACAAGAGAAAATTGAACGCTACTTATCAGTATCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGGTTCAGAAGGCTTAG 2358 0.4029 MSGSGRKLSSNWDSRDEPEFASESVTNSNSSRFLERNDMLNSRMGFSRMEPFSGGRGSNKDDVGSEDYKVLDATNAQDTDGSYNMKTSPGFEEWKIRKHSQYSKNDYGRRSRSQSRSPSRGFRYSDVDDRNRIRAGRSTKPCRDFAVGNCRRGSHCHFLHHDNQSCEDSRESRHRQDGPRYSNPRESGDYSIADRRSNEACINFEKGRCRTGESCRFVHHGKSNGFDKVSTYESSREREVDRRHMDSSFKQEGQHYPNHKSNIPCKYFALGNCLYGKDCRFSHDRHSFTSPRLRDDRSRSNQGEDQVLDRQKMSDSVTPNERPRDDRWVSDGSMAGVDKVWDGPKQNDLVAVSDTAKLVEDKKIISAPEPGLMTWPMNDGLDYSLNQNRVHNESPFSIVSIDKKEANCRTEENAVDNILLSQSLGGAGGIWPGDEKMSPDWNYGSRSSSHIKDEDGHNKHQVARGQGLNQNAQNITASHVVGQSQATVSIVPPRARIIEGIQNQELFTEKNYIVEPNITNASLSHTSSVNTPTQNVVSKEQLAQLSCLSASLAHILGTNHQLSQLHSTLNFCDAKDTLVVNKIEGSGNPVSMTFIKPDSAIGLKQYDPIHDSMEPNNINASGVSPTFSPSMKIAKNAVVIPPLLSNPGIFFDDSCKKETNKMVAELKASSQAENKITEENSPLENMDQDDGPDEAKKTKDVKGIRAFKFSLVELTKEILKPTWKDGKITKEDYKAIVKKVTEKVTGTVPRVHIPQTQEKIERYLSVSKPKLNKLVQAYVEKVQKA* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0832 785 Pfam RNA-binding, Nab2-type zinc finger 200 219 - -
Tpr3g0832 785 MobiDBLite consensus disorder prediction 163 188 - -
Tpr3g0832 785 Gene3D - 136 224 - -
Tpr3g0832 785 Pfam CCCH-type zinc finger 264 284 IPR041367 -
Tpr3g0832 785 MobiDBLite consensus disorder prediction 287 331 - -
Tpr3g0832 785 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 161 IPR000571 GO:0046872
Tpr3g0832 785 MobiDBLite consensus disorder prediction 1 84 - -
Tpr3g0832 785 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 783 - -
Tpr3g0832 785 MobiDBLite consensus disorder prediction 96 132 - -
Tpr3g0832 785 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872
Tpr3g0832 785 Gene3D - 235 295 - -
Tpr3g0832 785 MobiDBLite consensus disorder prediction 666 681 - -
Tpr3g0832 785 MobiDBLite consensus disorder prediction 96 113 - -
Tpr3g0832 785 MobiDBLite consensus disorder prediction 163 182 - -
Tpr3g0832 785 SUPERFAMILY CCCH zinc finger 260 284 IPR036855 GO:0046872
Tpr3g0832 785 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 783 - -
Tpr3g0832 785 MobiDBLite consensus disorder prediction 21 37 - -
Tpr3g0832 785 MobiDBLite consensus disorder prediction 666 699 - -
Tpr3g0832 785 ProSiteProfiles Zinc finger C3H1-type profile. 260 286 IPR000571 GO:0046872
Tpr3g0832 785 SMART c3hfinal6 260 285 IPR000571 GO:0046872
Tpr3g0832 785 SMART c3hfinal6 196 221 IPR000571 GO:0046872
Tpr3g0832 785 SMART c3hfinal6 136 162 IPR000571 GO:0046872
Tpr3g0832 785 ProSiteProfiles Zinc finger C3H1-type profile. 195 223 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0832 Tpr-Chr3 7866662 7873781 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr3g0832 zf-CCCH 0.0001 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0832 - K22909 gmx:100783856 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0832 3 7866662 7873781 Tpr3g0832 3 7866662 7873781 ECH