Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0824 ATGGCTATGGCGAATATGATTCCGGGGTTTCGATTCCATCCGACTGGAGTTGAATTGATGAAGTATTTTCTGAAAAGAAAAGTCATGGGAAAGAAGTTTCATAACAATGTGATCGCCGAACTTGATATATATAAATATTCACCTTGGGATCTCCCAGATAAATCTTACTTACAAAATGGGGATTTGGAATGGTACTTTTTCTGCCCGATTGAGAAGAAGTATGGAAGTGGTGCGAGGATGAATCGAGCTACGGAAATTGGTTTTTGGAAAGCTACCGGTAAGGACAGAGCTGTGCAATATAAGAATCAAACTGTTGGGATGATAAAAACACTGATATTTCACACTGGAAAAGCGCCTCGTGGTGATCGAACCGACTGGGTTATGCATGAGTATAGGCTTGAAGATAAGGACCTGGCCGATAAAGGAATTGTTCAGGATTCCTATGTAATCTGTAAGGTATTTCAAAAGGAAGGTCCCGGTCCCAGGAATGGTGCACAATATGGGAGGCCATTTAATGAAGAAGACTGGAGTGATGATGAAGTTGGATTACCTTTAGTAGCTGAATCGGCTGCGCTAGTTCCCAGTTCTGCTTTGACAACTAATAGTTCTGTCCTAAATGACCAAAATCTTCATGCTAGTGAATATGGTTCAACATCCATGCCATGTCAATTAAGATTGACGCCTTCTCCCTACCCAACAAATTCCTGTCAAACAGGATTACCGCTTTCTCCCGGCGTTGTCTATTCATGTCAAACAGGATTGATGTCTTCTGATACTGTGAGATCATGTGAAACAGGATTGCTGCCATCTCCCGATCCTGCGAATTCGTGTCAAATAGGATTGATACCTTCTCCCGACCCTGCGAGTTCATGTCAAATGGGATCGATGCTGCCTTTTCCCGACCCTGCGAATTCATGTCAAATAGGATCAATGCCTTCTCTCTACCCTGCAAATTCATGTCAAACAGGATTGATGCCTTCTCCCGACCCTGCGTATTCATGTCAAACAGAACCTGAAAATTCATGTCAAACAGGATCCATGCCTTCTCATGACCCTGCCAATTCATGTCAAACAGGGTCGATGCCTTATTCAGACCCTGCCAATTCATGTCAAACAGGGTCGATGCCTTATTCTGACCCTGCAAATCACTCATATCCAGACAATCAAGCTGTTAATAATGATGATATCTTATCAATGCTTGATATTTTCGAAGACAACGACATATTTCCTGAGGAAAATATTGCTGAAGGTGCACTTTTAGGTGACTTTTTTGAGGGTTTGGGAGACCTGGACTGTTCTGCGTTGGGATCCTTTGGGCAGAATGCTGAGTTTAGCACAAATGGAGTGGCTACTATGGGTGATGTTGGGGGTGACGACTTGGATTTCGTTCAGTTGACCGATCTCGACTCTGAGTTGTTCTGGCAGAGTACTACACCTGGAAGCTGGAATCAAAATAAATAA 1461 0.4305 MAMANMIPGFRFHPTGVELMKYFLKRKVMGKKFHNNVIAELDIYKYSPWDLPDKSYLQNGDLEWYFFCPIEKKYGSGARMNRATEIGFWKATGKDRAVQYKNQTVGMIKTLIFHTGKAPRGDRTDWVMHEYRLEDKDLADKGIVQDSYVICKVFQKEGPGPRNGAQYGRPFNEEDWSDDEVGLPLVAESAALVPSSALTTNSSVLNDQNLHASEYGSTSMPCQLRLTPSPYPTNSCQTGLPLSPGVVYSCQTGLMSSDTVRSCETGLLPSPDPANSCQIGLIPSPDPASSCQMGSMLPFPDPANSCQIGSMPSLYPANSCQTGLMPSPDPAYSCQTEPENSCQTGSMPSHDPANSCQTGSMPYSDPANSCQTGSMPYSDPANHSYPDNQAVNNDDILSMLDIFEDNDIFPEENIAEGALLGDFFEGLGDLDCSALGSFGQNAEFSTNGVATMGDVGGDDLDFVQLTDLDSELFWQSTTPGSWNQNK* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0824 486 PANTHER PLANT NAC DOMAIN PROTEIN 1 249 - -
Tpr3g0824 486 PANTHER PLANT NAC DOMAIN PROTEIN 261 471 - -
Tpr3g0824 486 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Tpr3g0824 486 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Tpr3g0824 486 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Tpr3g0824 486 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Tpr3g0824 486 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 249 - -
Tpr3g0824 486 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 261 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0824 Tpr-Chr3 7765470 7768966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0824 1 180 NAC Transcription Factor Family AT5G64060 65.556 2.29e-86 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr3g0824 NAM 8.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0824 - - mtr:MTR_8g093580 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0824 3 7765470 7768966 Tpr3g0824 3 7765470 7768966 ECH
Tpr3g0824 3 7765470 7768966 Tpr3g3145 3 34687885 34692698 PCT