Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0803 ATGGATGATGAGACTCATACTACTTTGCCAAATGGATTTAGCACAGAAACTCCTGAAAATCATTGTTTAAAAACAAACAACACCACCACCACCAACAACAATAATCTTAATCATCATCATAATAATAATAGCAATAAAGAACAAGACCGTTTTCTACCTATAGCAAATGTTGGTAGAATAATGAAAAAAGTTATTCCGGCAAATGGAAAAATCTCTAAGGACGCGAAAGAGACGGTGCAAGAATGTGTGTCGGAGTTTATAAGTTTTGTCACGGGAGAAGCATCGGATAAATGTCAAAGAGAAAAAAGAAAGACGATTAATGGCGACGATATCATTTGGGCTATTACAACTTTAGGCTTTGAAGATTATGTGGAACCATTAAAATCTTACCTTCAAAAATATAGAGATATTGAAGGTGAGAAAGTTAATGTTCCAAAACAACAAAGATCTGAGCAAAGGTTACATCAAGATCAACATCATAATCAAGATGAATTTAATAATCAACATTTCAATACTAGTGTATATACTTCAACAAATCTCATGTCTCAACCTCCTTATGTGACCAATGATCAACAATATCCATTACCTTTCTCATCAAATTCAATTCAAAAACAATTACGGCCGCAAGATCAGATTGATTCAATAGGTCATTGGTATGAATGA 663 0.3333 MDDETHTTLPNGFSTETPENHCLKTNNTTTTNNNNLNHHHNNNSNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYRDIEGEKVNVPKQQRSEQRLHQDQHHNQDEFNNQHFNTSVYTSTNLMSQPPYVTNDQQYPLPFSSNSIQKQLRPQDQIDSIGHWYE* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0803 220 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 209 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tpr3g0803 220 SUPERFAMILY Histone-fold 48 165 IPR009072 GO:0046982
Tpr3g0803 220 Gene3D Histone, subunit A 37 173 IPR009072 GO:0046982
Tpr3g0803 220 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 1 209 - -
Tpr3g0803 220 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634|GO:0006355|GO:0043565
Tpr3g0803 220 MobiDBLite consensus disorder prediction 7 22 - -
Tpr3g0803 220 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Tpr3g0803 220 MobiDBLite consensus disorder prediction 1 22 - -
Tpr3g0803 220 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Tpr3g0803 220 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Tpr3g0803 220 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0803 Tpr-Chr3 7595304 7596185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0803 46 218 CCAAT-HAP3 Transcription Factor Family AT2G13570 66.667 1.02e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tpr3g0803 CBFD_NFYB_HMF 3.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0803 K08065 - gmx:100778216 328.176