Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0798 ATGGCGAACAAGAGCGTGAAGAAACCACAGAGTCTCAACGATAGTCACTATCGTTTCCTTCAAGATCTCTCCGCTCCTCCCAAACCCTCATCCAAACCACTCGATGACGAATCCGATACACCGATTCAACCTCGAAGCCTCTTCTACCAAGATGTTGATGACGATACTATTCCTCAGTTTTCTGCTATCACCGACTTCGATTCTCCAATCGATCAAAATTCACCGGAGAATATTGAACCAGTTAGGGTAGAAGAAGCTCCTGTTCGGAATGATGTTCCCAAGTTTTCCGATAATAGTTCACTTAGTCAACATTCTTCTATGGAGAATCGCCAATCACGTGTGGTGGTAGAAGAAGCTCCTCTTTCTAACAAGGTTCCAAAGTTTTTTGATGAATATTCTCATCGTCAAAATTCTCGGGAGAATTGTAAACCAGTTAAGGCTGTAGAAGCTCCTCTTAGTCAAAATTATGCAGAGAATCGCCAACCAGTTAAGGTAAAAGAAGCTTTTCTTCCAAAGGAGGTTCTACAGGGTTTGGATAATAATTCTCTTAAGGAAGAAAAGAATACCAAGGTTAAGGTGCAGGGGCGCCGCCGCCTTTGCAAAGCTGCAGATAAAGAGGCTGTCAAAAAGGTTGCAGTTGATGAACCTAAGCTTGATGATCTTGCTGACTTTGATTCGCCTATTCCGGTGCGGAAAAATGTGATTGAGATTGAGGAAAGTAAGGGTAAGAGTCAAATTAGGGATATTTTGAATGACCTAACCTCCAGGTTTGATGCGTTATCGGTTGAGAAGAAGCCGCAGCCCAAACCGGTGCCAAAGCCTGTTGAGCGTTTTGAAGGAGGGAAAGAAATTTTTGAAGATGAGGGTTTGGAGTTTGGGAGTGCTGGATCTTCATTTTCTCAGAAACAGGAGCGCCATGACACCTCATCAAAGGATACTAAGAATGATAGTGGTGATATTGGGTATGAATCAGATGATTCGGTTCAAGTGTTGGATCACTTTGAGCCTGAGAATGATGGCTCTATAACATTGAGTGACCCACGGTCTACATATAAGTTGCAGCCTAAGATTGCAAAAATGTTGTATCCACATCAGCGGGAAGGATTAAAGTGGCTCTGGTCATTGCATGTTCGGGGTAAAGGTGGAATTTTGGGAGATGACATGGGTTTGGGAAAAACAATGCAGATTTGTGGCTTTCTGGCTGGACTGTTTTATTCACGTTTAATTAGAAGGGTATTGGTTGTGGCCCCAAAAACACTATTGCCACATTGGATCAAAGAGTTATCGGCTGTTGGTCTATCTGAGAAGACAAGAGAATATTTTGGATCCTGTGCAAAACTCAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGTGTTCTTCTCACCACTTATGATATTGTCCGCAACAATACCAAGTCCTTAAAGGGGCATAGTTATGTAGAAGATGATGAAGATAGCCCCACGTGGGACTACATGATACTTGATGAGGGCCACCTTATAAAGAACCCAAGCACTCAGAGAGCTAAAAGTTTGCTCGAGATACCCAGTGCTCATCGCATTATCATTAGTGGCACGCCATTGCAAAATAATCTCAAGGAATTGTGGGCATTGTTCAATTTCTGCTGCCCTGAGTTGCTTGGTGACAAAAAATGGTTCAAAGATAAATATGAAACACCTATACTTCGTGGAAATGATAAAAATGCTTCTGACAGAGACAAGCGTGTTGGTTCAGCTATAGCAAAGGAGCTAAGGGATCATATTCAGCCTTACTTTTTGAGACGTTTAAAGAGTGAGGTTTTCAATCAAGATACAGAAAAAACAACAGCAAAGCTTTCTCAGAAACGAGAAATCATTGTGTGGCTTCGGTTGACCAATATCCAGCGGCATCTTTATGAAGCATTTCTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGTTCACCACTGGCTGCCCTTACAATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACCAAGCGGGCAGCTGAGGATGTATTGGAAGGGATGGACTCCATGCTAAAGCCAGATGAGGTTAATGTTGCAGAGAAATTGGCGATGCATATAGCAGATGTTGCAGAAACAGACAAGTTTAAAGATGAGCATGATGTATCATGCAAAATTACTTTCATCATGTCATTGTTGGATAATTTGATCCCTGAAGGGCATAGGGTGCTTATCTTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCATAACATCTAAAGGTTATGACTTTTTACGAATTGATGGCACAACAAAATCCTGTGACAGAATAAAAGTTGTTGATGATTTCCAAGATGGTGTTGGAGCTCCAATATTTTTGTTGACTTCTCAGGTTGGTGGTTTAGGACTGACACTTACAAGAGCAGATCGTGTTATTGTTGTTGATCCTGCTTGGAACCCGAGTACTGATAATCAAAGTGTTGACCGAGCATATCGTATTGGACAAAAGAAAGATGTTATTGTCTATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATATAAAGGAGGACTATTCAAAACAGTTTCTGAAAAGAAAGAACAAACTCGCTACTTTTGCCAGCAGGATCTTAAGGAGCTTTTCAGCCTCCCAAAAGAAGGATTTGATGTGTCTGTTACCCAACGGCAATTGGCTGAGAAACATGATTCTCAACATATAGTGGATGACTCTTTCCATGCACATATAGAGTTCTTGAAAAGTCAGGGCATAGCTGGTGTTAGTCACCACAGTTTACTGTTTTCCAAGACAGAGCCAGTTCAAGAAGCTCCTGAGCATGAAGTAGCAAGGGTTCATAATACTCATTATATGGGAACTTCTTCGTCGTCGTCATATTCACGCGAGCAAATTGTTGACGGTGCTGCATTTGCTTTTAATCCTAAGGATGTTAATTTACACAAAAAAGACTCTTCTCCAAGTAGTGTTGGTAAATTGACTGAGTTAGAAATCAAGGATAGAATTTATCGGCTCTCCCAAATGCTCTCAAATACGGTGATGATTTCTAAATTACCTGATAAAGGAGAGAAACTTAAAAATCGGATTGTGGAGCTGAATCGAGAGCTTACTAAACTGAAGATGGAACAAACAAACGTAGTTGATTTGGATGATATTACCGATGAATTTGAAAAGGTGTTAAATGTATACCTTTTTATTATTATTATTTATAGGAAACAATGTTAA 3237 0.405 MANKSVKKPQSLNDSHYRFLQDLSAPPKPSSKPLDDESDTPIQPRSLFYQDVDDDTIPQFSAITDFDSPIDQNSPENIEPVRVEEAPVRNDVPKFSDNSSLSQHSSMENRQSRVVVEEAPLSNKVPKFFDEYSHRQNSRENCKPVKAVEAPLSQNYAENRQPVKVKEAFLPKEVLQGLDNNSLKEEKNTKVKVQGRRRLCKAADKEAVKKVAVDEPKLDDLADFDSPIPVRKNVIEIEESKGKSQIRDILNDLTSRFDALSVEKKPQPKPVPKPVERFEGGKEIFEDEGLEFGSAGSSFSQKQERHDTSSKDTKNDSGDIGYESDDSVQVLDHFEPENDGSITLSDPRSTYKLQPKIAKMLYPHQREGLKWLWSLHVRGKGGILGDDMGLGKTMQICGFLAGLFYSRLIRRVLVVAPKTLLPHWIKELSAVGLSEKTREYFGSCAKLREYELQYILQDKGVLLTTYDIVRNNTKSLKGHSYVEDDEDSPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKDKYETPILRGNDKNASDRDKRVGSAIAKELRDHIQPYFLRRLKSEVFNQDTEKTTAKLSQKREIIVWLRLTNIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPDEVNVAEKLAMHIADVAETDKFKDEHDVSCKITFIMSLLDNLIPEGHRVLIFSQTRKMLNLIQECITSKGYDFLRIDGTTKSCDRIKVVDDFQDGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTVSEKKEQTRYFCQQDLKELFSLPKEGFDVSVTQRQLAEKHDSQHIVDDSFHAHIEFLKSQGIAGVSHHSLLFSKTEPVQEAPEHEVARVHNTHYMGTSSSSSYSREQIVDGAAFAFNPKDVNLHKKDSSPSSVGKLTELEIKDRIYRLSQMLSNTVMISKLPDKGEKLKNRIVELNRELTKLKMEQTNVVDLDDITDEFEKVLNVYLFIIIIYRKQC* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0798 1078 MobiDBLite consensus disorder prediction 93 112 - -
Tpr3g0798 1078 SMART helicmild6 745 828 IPR001650 -
Tpr3g0798 1078 Pfam SNF2-related domain 378 666 IPR000330 GO:0005524|GO:0140658
Tpr3g0798 1078 PANTHER OS04G0692700 PROTEIN 318 939 - -
Tpr3g0798 1078 PANTHER SNF2/RAD54 FAMILY MEMBER 318 939 - -
Tpr3g0798 1078 MobiDBLite consensus disorder prediction 61 75 - -
Tpr3g0798 1078 MobiDBLite consensus disorder prediction 304 321 - -
Tpr3g0798 1078 SMART ultradead3 356 554 IPR014001 -
Tpr3g0798 1078 Coils Coil 1026 1046 - -
Tpr3g0798 1078 MobiDBLite consensus disorder prediction 1 18 - -
Tpr3g0798 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 596 IPR027417 -
Tpr3g0798 1078 Gene3D - 336 595 IPR038718 -
Tpr3g0798 1078 MobiDBLite consensus disorder prediction 295 321 - -
Tpr3g0798 1078 MobiDBLite consensus disorder prediction 260 279 - -
Tpr3g0798 1078 MobiDBLite consensus disorder prediction 1 117 - -
Tpr3g0798 1078 Pfam Helicase conserved C-terminal domain 716 828 IPR001650 -
Tpr3g0798 1078 Gene3D - 615 915 IPR027417 -
Tpr3g0798 1078 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 719 878 IPR001650 -
Tpr3g0798 1078 CDD SF2_C_SNF 708 839 - -
Tpr3g0798 1078 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 373 546 IPR014001 -
Tpr3g0798 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 888 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0798 Tpr-Chr3 7559917 7570206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0798 361 882 RAD5 or RAD16-like Gene Family AT1G02670 24.525 1.10e-37 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr3g0798 SNF2_N 6.7e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0798 K20093 - gmx:100779283 1426.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0798 3 7559917 7570206 Tpr3g0798 3 7559917 7570206 ECH