Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0788 ATGCAAGGTGGATTAGAGTTCCCACCTGGGTTTAGATTTCATCCTACTGATGATGAACTTGTGAATCACTACTTATGTAGAAAGTGTGCTTCACTACCTATTTCTGTTCCAATTATCAAAGAAATTGATTTGTATAAGTTTGATCCATGGCACCTTCCAGAAATGGCTCTTTATGGTGAGAAAGAATGGTATTTTTTCTCTCCAAGGGACAGAAAATATCCAAACGGTTCAAGACCGAACCGGGCTGCAGGAACCGGATACTGGAAAGCCACTGGAGCCGATAAGCCGATTGGTAAGCCGAGGCCACTTGGAATAAAGAAAGCACTTGTGTTCTATGCTGGTAAAGCTCCTAAAGGAGTTAAAACCAATTGGATCATGCATGAATATCGTCTTGCAAATGTCGATAGAACCGCATCAAAAAATAATCACAATTTAAGACTTGATGATTGGGTGTTGTGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAATACAATGACACAAAACCATCAATGTTTTCAAAGGAAGTTCAATTTGAGAATGAGACGAAACTTAAGATCGAAATGAACGGCCTGGATGACTTTAGGATAATTAATGATCAATTATGCACTGACACGTCAGATTCAGTGCCACAGTTTCACACGGACTCAAGTTGTTCTGAGCACGTGGTTTCGCCGGATGTCACGTGCGATAAAGAGGTCCAAAGCGAGCCCAAATGGAATGAATTTGTTTTGGGCCCAGACCCAGTTTCAGCCTTTGATTTTCAGTTGAATTTTATGGATGATGGTGAAGATGACTATTTTACCCCTCAGGTTCAGTACCAAATGAATAATTGGCAAGATGTGTTTATGTACCCACCTAAGTAA 867 0.4025 MQGGLEFPPGFRFHPTDDELVNHYLCRKCASLPISVPIIKEIDLYKFDPWHLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPRPLGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRTASKNNHNLRLDDWVLCRIYNKKGKIEKYNDTKPSMFSKEVQFENETKLKIEMNGLDDFRIINDQLCTDTSDSVPQFHTDSSCSEHVVSPDVTCDKEVQSEPKWNEFVLGPDPVSAFDFQLNFMDDGEDDYFTPQVQYQMNNWQDVFMYPPK* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0788 288 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Tpr3g0788 288 Gene3D NAC domain 16 163 IPR036093 GO:0003677|GO:0006355
Tpr3g0788 288 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 5 271 - -
Tpr3g0788 288 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Tpr3g0788 288 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Tpr3g0788 288 PANTHER NAC TRANSCRIPTION FACTOR 56 5 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0788 Tpr-Chr3 7491440 7493847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0788 1 285 NAC Transcription Factor Family AT1G01720 62.630 3.84e-120 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr3g0788 NAM 9.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0788 - - gmx:100170751 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0788 3 7491440 7493847 Tpr3g0788 3 7491440 7493847 ECH
Tpr3g0788 3 7491440 7493847 Tpr3g3202 3 35198690 35200573 ECH