Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0726 ATGCCTTTTGAAGTCATGGATCAGAGGGGTGTTTCTGACATTTTTGATGATATTTCCTATCATTCTGAGAGGAATGTTGGATTAAGGAAGCCAAAGTACATGAATGTCCAACACCCCCAAGGAATGAATGGAATGGTAGCACCGCCTGGTAGCACTTTGAATACTTCATTGCCCTTTGAAGTAAATGGAAAATCTGGATTTCCGATGTCGCAAACTAATCTATCTGAGGAAAGTGTAGAAAAGCTACCTTTTGGCGCAGAACATGGGATTGCTGGTGTATTGAAAGGTTCTAATGAATCCTTTCGTTATAATCCCCAATCATGGTCTGACGTGTTTAGGCAGTCAGCACCTACCTCGTATCGTCTAGTTGGGAATAAGCTTGTCGCGGTCGATGCTGTTCCCCACGAAAGTAGTCTATTCTCGAGCTCACTTTCTGATATGTTTAGCCAGAAATTGAATCTATTGGCGAATAATCTTCTGTCCAATCAGCAGACTACTGCCGGTTCCCTTCTGGAGGAAGATCCGTATAAATCTCTTGAAGAGATGGAGTCTGACTATATACATAATCTCCTTCCTGATGAAGATGACCTATTTTCTGGTGTTGCTGATGATTTAGAAAACAATTCTTATGCTAGGATTAAAGATGACTCGGAAGATTTGGATTTGTTTAGTAGTGGCGGAGGCATGGAGCTGGAAGGAGATGAACGTTTAAGTTCGCTGAAAAGAACAAGTGGTTTGGATGGAGATAACAGTTTCTTTGGAGGTTCCAAAGGAAAATTTCCTTTTGTTGAACAGCCTTCTAGGACACTTTTTGTTAGAAACATTAATAGCAGCGTTGAAGATTTTGAGCTAAAGTCTCTATTTGAGCAATATGGCGATATCCGAACCATGTATACAGCTTGCAAGCATCGTGGGTTTGTGATGATTTCTTATTTTGATATAAGGGCAGCACAGAAAGCCATGCAAACACTACAAAGCAGGCCATTGAGGTCTAGGAAACTAGACATACATTATTCGATTCCAAAGGTCAATGCTCCAGAGAAGGATATTGGTCATGGTACGCTGATGTTATCTGGGTTTGATTCATCTGTTTTGAATGATGAGCTTATACATTATTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCCGGAATGAAGCACCTCAAATTTGTAGAATTTTATGACGTCCGAGCTGCAGAAGCTGCACTTCGGGCATTGAACAGGGTTGAAATTTCTGGCAACCAGATTAAGCTTGAACCTGGTCATCCTAGGTTCGCGAGATGTCTGATGCAACAGTCTTATAAGGTGCAAGATGAAAGAGATCTTGGTCGTAGCATTATTGACAACTTACAATTGAGACAAAAGCCAACAGTGACTTCTGGAGCAATAGATTCTGCCAGTTTGGAAAATGGATATAACCAGAGATTTCAATCTGCAATGCAGCAACAGCCTTTGAATGGATTTTTTGATAATTCATTCTTTCATGTCAACTCTGGCGTCAACAACACTGCGATAGGGGCATCTACCGGAAAAGTTTCTGGCGTTTCCGAGTCCAGTAACCCTGTCGATGCAATGAAGTTTGCATCCAGTCCGACAACATTTCATCCTCATTCTTTACCAGAGTATCATGGAAGTTTAACTAATGGTAGTCCTTATAACTTTTCTAGCACCATTGGCAACAAGGCTGGTAACATAGGCGCTGGAGTGACAGAAGCTGCTAACGGCAGGCATATTCATGGAATAAGCTCAACTGGGAACTTAGCAGAATTCAATGGAGGAGGATCATCCGGAAACGAGATCCGCGCACATCATGGACTTAATCATATATGGAGCGGCTCCAATTTGCATCAGCAATCGCCATCAAGTAACATGCTTTGGCAGAAAACGCCATCGTCATCATTTGGTAATGGTTCTCCAGGCCTGCCTCAAATGTCAAGCTTTGCTAGAACACCTCCTCATTTGCTGAGAACACAACATTTGGATCATCATGTTGGATCAGCGCCGGTTGTTACAGCCTCTCCTTGGGAAAGGAAAAACTCTTACTTGGGAGAGTCTCCTGATGCGTCTGGTTTTCACGTGAGTTCTCCTGGAAATGGAGGTTTTCATGGTTCTTGGCAAATGCGTCCGATGGACTTTTCTCCTCATAACAACATGTTTTCTCATGTTGGTGGGAATGGTACTGAACTCTCATCCAGTGCTGGGCAGGGCTCGCCTAATCCGTTGTCACATATTCTCTATGGGAGACAACCTACGACTACAATGTCGAAATTTGATCCTGCCAATGAGCGAATGAAAAACGGTAACGGTTATAGTCGTAAGAGTGAAGCTAACACCATGAGTAGTGCTGACAGAAAACAATATGAACTTGACCTGGGCCGCATAATGCGTGGAGAAGACACTAGAACAACACTTATGATAAAAAACATTCCCAACAAGTATACTTCAAAGATGCTACTTGTTGCCATAGATGAGAAATGTCGTGGAACTTATGATTTTCTGTATTTACCAATTGATTTCAAGAATAAATGTAATGTTGGATATGCGTTCATAAATATGACTGATCCTGCTCAAATTATTCCTTTGCACCAGGCTTTCCATGGTAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTTGCATCACTTGCATATGCTCGAATTCAAGGAAGAACTTCTCTTATTGCTCATTTCCAGAATTCAAGTCTGATGAATGAGGATAAACGTTGCCGCCCTATTCTCTTCCAGACAGAAGGCCCAAATGCTGGCGATATGGAGCCTTTCCCCATTGGAGCCAATGTTAGAGTGAGACCTGGAAAATCTCGCAATGCTGGCTACGAGGAGAATCGCAACCAAGCTCCTCCTTCAACTTTAACAAACGGAGAAGAGTCGTATGCAAATGGAAACTCCGACTGA 2919 0.4193 MPFEVMDQRGVSDIFDDISYHSERNVGLRKPKYMNVQHPQGMNGMVAPPGSTLNTSLPFEVNGKSGFPMSQTNLSEESVEKLPFGAEHGIAGVLKGSNESFRYNPQSWSDVFRQSAPTSYRLVGNKLVAVDAVPHESSLFSSSLSDMFSQKLNLLANNLLSNQQTTAGSLLEEDPYKSLEEMESDYIHNLLPDEDDLFSGVADDLENNSYARIKDDSEDLDLFSSGGGMELEGDERLSSLKRTSGLDGDNSFFGGSKGKFPFVEQPSRTLFVRNINSSVEDFELKSLFEQYGDIRTMYTACKHRGFVMISYFDIRAAQKAMQTLQSRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGFDSSVLNDELIHYFGFYGEIKEIYEYPGMKHLKFVEFYDVRAAEAALRALNRVEISGNQIKLEPGHPRFARCLMQQSYKVQDERDLGRSIIDNLQLRQKPTVTSGAIDSASLENGYNQRFQSAMQQQPLNGFFDNSFFHVNSGVNNTAIGASTGKVSGVSESSNPVDAMKFASSPTTFHPHSLPEYHGSLTNGSPYNFSSTIGNKAGNIGAGVTEAANGRHIHGISSTGNLAEFNGGGSSGNEIRAHHGLNHIWSGSNLHQQSPSSNMLWQKTPSSSFGNGSPGLPQMSSFARTPPHLLRTQHLDHHVGSAPVVTASPWERKNSYLGESPDASGFHVSSPGNGGFHGSWQMRPMDFSPHNNMFSHVGGNGTELSSSAGQGSPNPLSHILYGRQPTTTMSKFDPANERMKNGNGYSRKSEANTMSSADRKQYELDLGRIMRGEDTRTTLMIKNIPNKYTSKMLLVAIDEKCRGTYDFLYLPIDFKNKCNVGYAFINMTDPAQIIPLHQAFHGKKWEKFNSEKVASLAYARIQGRTSLIAHFQNSSLMNEDKRCRPILFQTEGPNAGDMEPFPIGANVRVRPGKSRNAGYEENRNQAPPSTLTNGEESYANGNSD* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0726 972 CDD RRM3_MEI2_like 807 892 IPR034454 -
Tpr3g0726 972 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 341 IPR000504 GO:0003723
Tpr3g0726 972 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 967 - -
Tpr3g0726 972 MobiDBLite consensus disorder prediction 946 972 - -
Tpr3g0726 972 MobiDBLite consensus disorder prediction 937 972 - -
Tpr3g0726 972 Pfam RNA recognition motif 2 804 900 IPR007201 -
Tpr3g0726 972 SMART rrm1_1 806 882 IPR000504 GO:0003723
Tpr3g0726 972 SMART rrm1_1 354 422 IPR000504 GO:0003723
Tpr3g0726 972 SMART rrm1_1 269 337 IPR000504 GO:0003723
Tpr3g0726 972 SUPERFAMILY RNA-binding domain, RBD 806 890 IPR035979 GO:0003676
Tpr3g0726 972 Gene3D - 262 351 IPR012677 -
Tpr3g0726 972 Gene3D - 352 445 IPR012677 -
Tpr3g0726 972 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 967 - -
Tpr3g0726 972 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 353 426 IPR000504 GO:0003723
Tpr3g0726 972 CDD RRM1_MEI2_like 267 342 IPR034453 -
Tpr3g0726 972 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 334 IPR000504 GO:0003723
Tpr3g0726 972 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 420 IPR000504 GO:0003723
Tpr3g0726 972 SUPERFAMILY RNA-binding domain, RBD 265 425 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0726 Tpr-Chr3 6988574 6996213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0726 266 419 Eukaryotic Initiation Factors Gene Family AT1G71770 26.380 9.33e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0726 - - gmx:100797893 1318.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0726 3 6988574 6996213 Tpr3g3272 3 36000922 36008821 ECH
Tpr3g0726 3 6988574 6996213 Tpr3g0726 3 6988574 6996213 ECH