Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0722 ATGCATTTCACAAATCTCGATGACACTCCTATGTTCCGTCAACAGCTCCAATGCTTGGAGGAAAGTGCTGAATCATTACGCCTTAGAAGCACCAAGTTCTACAAAGGATGTCGAAAGTATACGGAAGGGCTTGGAGAGGCTTATGATGGAGAGATCGCATTTGTAAGCTCCCTTGAAAGTTTTGGAGGAGGGCATAATGATCCTCATTTCGTTGCTTTGGGAGGACCTGTAATGAACAAATTTACCATTGCTTTGAGAGAAATCAGTACATACAAGGAACTTCTTAGGTCGCAGGTAGAGCACATGATTGATGACCGGTTACTACAAATTGTCAATATTGACATCAATGAAGTCAAGGAAGCTCGTAAGCGTTTTGATAAAGCTTCCCTTGTATATGACCAGGCACGTGAAAAGTTTATGTCACTGAGAAAAAGCACTAAGATTGATATTGCCACCGTCGTAGAAGAGGAATTGAAGAATGCAAGAACATCGTTTGAGGAAGCCCGTTTCAGTCTGGTTGGTTCTCTTAATAACATTGAGGTCAAGAAGAGATTTGAGTTTTTAGAGGTTGTTACTGGAATTATGGATGCCCATCTTCGATACTTTCAACAGGGATATCAGCTACTACATGAGATGGAACCTTTCATTAGCGAGGTTTTGGATTATGTACAACAGTCAAAAGAAAGTTTCGATAAGGACCAGATATTACTTTATAAAAGAATGCAGGAATACAAGAAACAGGTTTATCAAGAAAGTAGGCTGTCCTTGAATGGCCCGAATGGTTCTCCTACTGGAGACTCTGTGCAACCTTTTTCTAGGATATCACCTGAAGTAGTAGATGTAATAAAGGAATCTGCCGCAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCAAAGCGATCTTCCAATTTGAGAGGTGACTGGAAAAGAAGGTATTTTGTTCTTGATAGCCGAGGAATGTTGTATTACTACCGCAAACCATGGAGTGTGTCATATGACAATGATCAACCATCTCCAAGAAAGAATGCCGCTGAAAATGGTTCTGGGTTTCTGAGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCATGATGAAAAATCTGTAGCACGTCATACAGTAAATCTGCTGACATCAACTATAAAGGTTGATGCTGATCAGTTAGATTTAAGATTTTGCTTCAGAATAATTTCGCCATCAAAGAGCTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGAGTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTGTTGAGTGTCCAGACCCTAGGATCACCTCCCTCAGCTGACTCAGAAAACGGTGACTCTTGCTCAATCGACAAGAATGATATGTTAGAAAGTTCTCCAGATGATGACCGCACTGAGGTCGTAAAGTCTGGATCCAAAAGTAACCACTTACGTTTATCTAAAAGTATGCAGTTGCAAAAACGCAGTATAAAAAATGAAAAACCTATTGATGTTCTTAGAAAGGTGAGCGGGAATGACAAATGTGCTGATTGTGGTAAGCCTGAACCAGACTGGGCATCTCTAAACCTCGGCATCCTTATATGCATTGAATGCTCCGGTGTTCATCGTAATCTTGGGGTGCATATATCAAAAGTAAGATCACTGACACTTGATGTGAAAGTATGGGACCACTCTGTCTTAAGTATGTTCGAGTCTCTGGGCAATAATTTTGCAAACTCAGTTTGGGAGGAGCTGTTATGTTCAGAGAGTACTTTGCAAGATGATGACACTCATGTTGGTTCATCCAAGGAAAATAGAGACAACCTATTTCATGCAAGAAAACCAAAACATGATGATTCTAATCCATTAAAGGAAAAGTTCATTCACGCAAAGTATGCTGAGAAAATATTTATTTGCCGGAAAGACAAAACCCCTGCACAACAAATGTTGGAAAGCATCTGTGCTAATGACAAGAAGGCAGTGTACCAGCACATTGTCAAGTCAGAAATGGATGTCAATGCCATCAGTAAGCAAGCATTTTCTGGTAACTCTTCCAACATAGCTTCTTTGATTAATTTCAAAAAATCATCTGAAAGTGAGAATCAGTTGATTGAGGACATACAAGATGGTTCTAGTGTGCTTCACCTGGCTTGCTTAACAAGTGACGCTGGCATGGTGGATCTTCTTCTACAGCATGGGGCAGATGTAAATGCTTGTGATTCAAGAAGTTGGACACCACTACATTACTGTATTACCAGAGGGAAGCCCGCAGCTGCTAAAGTGCTTCTTCTGAGGGGGGCCAATCCACATTTAGCTGATAAAGAAGGCAACACTCCTCTTAAGCTTGCAATCGAATCCAGCTGTGTTGGCAATGAAATTCTCACTCTCTTGGCAAGATGA 2382 0.4085 MHFTNLDDTPMFRQQLQCLEESAESLRLRSTKFYKGCRKYTEGLGEAYDGEIAFVSSLESFGGGHNDPHFVALGGPVMNKFTIALREISTYKELLRSQVEHMIDDRLLQIVNIDINEVKEARKRFDKASLVYDQAREKFMSLRKSTKIDIATVVEEELKNARTSFEEARFSLVGSLNNIEVKKRFEFLEVVTGIMDAHLRYFQQGYQLLHEMEPFISEVLDYVQQSKESFDKDQILLYKRMQEYKKQVYQESRLSLNGPNGSPTGDSVQPFSRISPEVVDVIKESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKPWSVSYDNDQPSPRKNAAENGSGFLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIKVDADQLDLRFCFRIISPSKSYTLQAENAVDQMEWMEKINGVIASLLSVQTLGSPPSADSENGDSCSIDKNDMLESSPDDDRTEVVKSGSKSNHLRLSKSMQLQKRSIKNEKPIDVLRKVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDHSVLSMFESLGNNFANSVWEELLCSESTLQDDDTHVGSSKENRDNLFHARKPKHDDSNPLKEKFIHAKYAEKIFICRKDKTPAQQMLESICANDKKAVYQHIVKSEMDVNAISKQAFSGNSSNIASLINFKKSSESENQLIEDIQDGSSVLHLACLTSDAGMVDLLLQHGADVNACDSRSWTPLHYCITRGKPAAAKVLLLRGANPHLADKEGNTPLKLAIESSCVGNEILTLLAR* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0722 793 CDD BAR_SFC_plant 15 215 IPR035670 -
Tpr3g0722 793 MobiDBLite consensus disorder prediction 590 610 - -
Tpr3g0722 793 SMART ANK_2a 736 765 IPR002110 GO:0005515
Tpr3g0722 793 SMART ANK_2a 703 732 IPR002110 GO:0005515
Tpr3g0722 793 Gene3D - 285 437 IPR011993 -
Tpr3g0722 793 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Tpr3g0722 793 SUPERFAMILY PH domain-like 203 427 - -
Tpr3g0722 793 Gene3D Arf GTPase activating protein 474 640 IPR038508 -
Tpr3g0722 793 ProSiteProfiles Ankyrin repeat profile. 736 768 IPR002110 GO:0005515
Tpr3g0722 793 Pfam BAR domain of APPL family 6 232 - -
Tpr3g0722 793 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 792 - -
Tpr3g0722 793 Pfam PH domain 294 426 IPR001849 -
Tpr3g0722 793 Gene3D - 641 791 IPR036770 -
Tpr3g0722 793 PANTHER CENTAURIN/ARF 1 792 IPR045258 GO:0005096
Tpr3g0722 793 MobiDBLite consensus disorder prediction 448 472 - -
Tpr3g0722 793 SUPERFAMILY ArfGap/RecO-like zinc finger 493 633 IPR037278 -
Tpr3g0722 793 SUPERFAMILY Ankyrin repeat 648 782 IPR036770 -
Tpr3g0722 793 CDD PH_ACAP 295 431 - -
Tpr3g0722 793 SMART PH_update 293 429 IPR001849 -
Tpr3g0722 793 ProSiteProfiles Ankyrin repeat region circular profile. 703 734 - -
Tpr3g0722 793 ProSiteProfiles PH domain profile. 292 427 IPR001849 -
Tpr3g0722 793 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Tpr3g0722 793 Coils Coil 118 138 - -
Tpr3g0722 793 Pfam Ankyrin repeats (many copies) 705 757 IPR002110 GO:0005515
Tpr3g0722 793 ProSiteProfiles Ankyrin repeat profile. 703 735 IPR002110 GO:0005515
Tpr3g0722 793 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Tpr3g0722 793 ProSiteProfiles ARF GTPase-activating proteins domain profile. 494 639 IPR001164 GO:0005096
Tpr3g0722 793 SMART arf_gap_3 494 638 IPR001164 GO:0005096
Tpr3g0722 793 PRINTS HIV Rev interacting protein signature 506 525 IPR001164 GO:0005096
Tpr3g0722 793 PRINTS HIV Rev interacting protein signature 525 542 IPR001164 GO:0005096
Tpr3g0722 793 PRINTS HIV Rev interacting protein signature 548 569 IPR001164 GO:0005096
Tpr3g0722 793 CDD ArfGap 497 626 - -
Tpr3g0722 793 Pfam Putative GTPase activating protein for Arf 497 632 IPR001164 GO:0005096
Tpr3g0722 793 ProSiteProfiles Ankyrin repeat region circular profile. 736 768 - -
Tpr3g0722 793 MobiDBLite consensus disorder prediction 437 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0722 Tpr-Chr3 6946328 6957679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0722 486 636 C2H2 Transcription Factor Family AT3G07940 39.474 4.15e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0722 K12489 - gmx:100792517 1205.66