Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0684 ATGGAGTGGAACAATTTGAAAGCACCTTCATGGGATTTAACTGAAATGGATCAAACAACCTTAAACAACATAGAAACAATGGATGGTTCAAAGAGGTTTGGAGATTATAGAACACAAAGGGAATTTTCTGTTGATTTGAAGCTTGGTCATGTTGGAAATTCTAGCACTGAATCAGTTGTAACAAAATCCAAAGATGTTGTTGGTGGAGTTTCAAAAATGACATCTTCATCATCTTCAACTGGTTCAGGTTCATCTAAGAGAGCTAGAGCTATTAACAATGGAACTCAGATAGTTTCATGTCTTGTTGATGGTTGTCAAGCTGATCTGAGTAATTGTAGAGATTATCATAGGCGCCATAAGGTTTGTGAACTTCATTCCAAGACTGCACAAGTCACAATTGGTGGACATAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCATTGGAGGAATTTGATGAAGGAAAAAGGAGCTGTAGAAAACGTTTAGATGGACACAACCGACGGAGAAGAAAGCCACAAGCAGAACCCATAACTCGAAGTAGTAGCTTTTTGTCCAATTACCAAGGAACCCAGTTGCTACCCTTCTCAAGCTCACACATATACCCTTCTACTGCTATGGTGAATCCTACTTGGGGTGGAGGAGATGTTAGGCTCCATAATCACAACCAACACCAACCAATGCATCATCATCATCATTTGGTCGAAAAACAAGACCTTTTTCTTGGAACCTCATCATCTCCAAACAGCAGCTACAGAGGTAGTAGCACTAACCAGAACACAATAGCCACACTCAACAACAACAATCAACATCTACCAGCTGGTTTGAGTCAAACATTTCACAGGAACACAACAAACCCATTTTCAGAAAGATGCAAAATGTTCTGTGACAACAACAATAACACTTCCTGTGCTCTCTCTCTTCTGTCATCATCAGTACCACCACAGACACATGATCATCCTGAAAATGGATTGAATCACATGGTGAATACTCACTCATCTTTTATGCAACCTTTAGGTTTGAGTTTACATGATCATAGCTTGGGATCTGTTGACTCTGTTTTGGGTTCAAATGATCAGAATGCTCATTGTTCTTCAATGTATAACATGGGTTCTAATGATCAATCTCATTCTCATGAAGGAAATCATAATGAAGCTCCTCCATTATTTCCCTTTCAATGGGATTAG 1191 0.3938 MEWNNLKAPSWDLTEMDQTTLNNIETMDGSKRFGDYRTQREFSVDLKLGHVGNSSTESVVTKSKDVVGGVSKMTSSSSSTGSGSSKRARAINNGTQIVSCLVDGCQADLSNCRDYHRRHKVCELHSKTAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQAEPITRSSSFLSNYQGTQLLPFSSSHIYPSTAMVNPTWGGGDVRLHNHNQHQPMHHHHHLVEKQDLFLGTSSSPNSSYRGSSTNQNTIATLNNNNQHLPAGLSQTFHRNTTNPFSERCKMFCDNNNNTSCALSLLSSSVPPQTHDHPENGLNHMVNTHSSFMQPLGLSLHDHSLGSVDSVLGSNDQNAHCSSMYNMGSNDQSHSHEGNHNEAPPLFPFQWD* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0684 396 MobiDBLite consensus disorder prediction 373 396 - -
Tpr3g0684 396 Pfam SBP domain 100 173 IPR004333 GO:0003677
Tpr3g0684 396 Gene3D - 91 161 IPR036893 GO:0003677|GO:0005634
Tpr3g0684 396 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 10 396 - -
Tpr3g0684 396 SUPERFAMILY SBT domain 98 179 IPR036893 GO:0003677|GO:0005634
Tpr3g0684 396 ProSiteProfiles Zinc finger SBP-type profile. 97 174 IPR004333 GO:0003677
Tpr3g0684 396 MobiDBLite consensus disorder prediction 164 185 - -
Tpr3g0684 396 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 10 396 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0684 Tpr-Chr3 6586421 6590827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0684 1 252 SBP-box Gene Family AT5G50670 48.881 2.37e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr3g0684 SBP 2.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0684 - - cam:101507938 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0684 3 6586421 6590827 Tpr3g0684 3 6586421 6590827 ECH
Tpr3g0684 3 6586421 6590827 Tpr3g3317 3 36608512 36612865 PCT