Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0680 ATGGATTTTCGTAATCGTTGTTTGCCGGTTAGAATGGTTGCACAGTCGTTACAGATTCGCGATTCTGTTGCGAATGTTGACTGTGGTGGTGGTGGTGGTGTTGTTGTTCCGAAGGTTTCCGGGAAGAAGAATGAGGTGAACTCGACGGTGAACTTTAGTGGAAAGAAAACCGATTCAACAGAAACTTCACCATTGCAGAATCGAAGACGGAGCTCGAGAATCCAATCTCTGCTGAAAAAAACTGACGAGAATCAGCGTCGCCGGAAAGAAAAATCTGTTGTGGTTGTAGCTCCGCCGAAGTCGAACAAGCGTGTTAAGAAAAGTCCCGGCGAGCTGAGTGTGACTAAGGAAGGTGTTTCCGAGAACGAAACGAAGAAGAAGGAGAAGAAATCTGCATCGTGTGTGAAACGTGAGCTGATGGAAGTTCGGAATCAGAAAATAACGGCGGAGTCGGAAAATGCGGTTGCTGAAAATGCAGCTAGTGGTGCATTAGCTGACAAGAGATTAACTGCTAAGGTGAAGGAGACGATTAGGGTATTTAACAAACACTATCTTCATTTGGCTCAGGAGGAGGAAGAGAGATCTGCTAAAGCGAAAGCAGAAGCTAAGAAAAAAGAATCAGCTAAGGACGACACTCAACCTAAAGAAAAAAAAATTTCCAAGCGACCTGATCTGAAGGCCTTAACAAAGATGTTGAAGAATAATGAGATACTGTATCATGAGAAGAGAATTGGCAATATTCCAGGTATTGAGGTTGGCTATCAGTTTTATTCTCGTGCTGAAATGGTTGCAATTGGTTTTCATAGCCACTGGTTAAACGGTATTGATTGTATGGGCAAAAATTATACAAAAGTGTACAACGACTACCAATTCCCAATTGCTGTGGCCATTGTTTTGTCAGGCATGTATGAGGATGATGTGGATAATGCCGAGGATGTTGTGTACACTGGTCAAGGTGGGCATGATCTGAATGGTGATAAGCGTCAAATACAAGATCAAAAATTGGAGCGGGGTAATTTAGCACTCAAGAACTGCTCGGAGCAAAATGTACCAGTTAGGGTGATTCGAGGTCATGGCTCTACTAGCAGTTACAGTCGGAAAGTGTATACATATGATGGCCTTTACAAGGTTGTCAATTATTGGACGGAGAAGGGAATATCGGGCTACACTGTTTATAAGTTTCGGCTTAGGAGGATGGATGGACAGCCTACATTAACAACACAACAGGTTTATTTCACATGTGGACGTGTACCTCAGACTGTAGCAGAACTACGAGGGTTGGTATGTGAGGATATCACTGAAGGTCAGGAACATGTGCCCATTCCAGTTACAAATTTGGTTGACGACTCCCCTGTTCCACCCACAGGTTTCAAATATTTAAAGTCTCTGAAGGTTGCAAAAAGTGTTAAGATTCCTGCCAATGCCTCTGGGTGCAAATGCAAAGGCAAGTGTATTGATCCAACAACTTGTGAATGTGCAAAGCGCAATGGCTCTGAATTCCCCTATGTATCTAGGGATGGTGACAGATTAATTGAAGCTAAAGATGTTGTGTTTGAATGTGGTCCCAATTGTGGTTGTGATCCTGGTTGTTTGAACCGAACTTCTCAAAAAGGACTTCGATATCGTCTCGAGGTTTTCCGTACTGCAAAGAAAGGATGGGGTGTTAGATCTTGGGATTTTATACCTTCTGGTGCACCAGTTTGTGAGTACACAGGAATACTTGGTAGAGCAGGTGATATGGACAGTGTGTTGGAAAACAACTACATTTTTGAGATAGATTGCTTGCAAACAATCAAGGGACTTGGTGTAAGAGAGAGGCGGTCACAAAATGTAGCATATGCTGCAAATCTGTTGGACAACTATGATGGCCAAGATTCTGAAGCACCAGAGTTTTGTATTGATGCGGGATCCACTGGAAATATTGCTAGGTTTATAAACCATTGTTGTGACCCTAATTTATTTGTACAATGTGTTTTGAGTACACACCATGATTTGCGATTGGCTCGAGTTGTGCTGTTTGCTGCTGACAACATACCCCCTTTACAGGAGCTGACATATGACTATGGCTGTGCGCTTGACAGTGTATTGGACTCTGATGGGAAGGTAAAGCAAATGGCATGCTATTGTGGAGCTTCCGGCTGCAGGAAGCGGTTGTTCTAA 2160 0.4319 MDFRNRCLPVRMVAQSLQIRDSVANVDCGGGGGVVVPKVSGKKNEVNSTVNFSGKKTDSTETSPLQNRRRSSRIQSLLKKTDENQRRRKEKSVVVVAPPKSNKRVKKSPGELSVTKEGVSENETKKKEKKSASCVKRELMEVRNQKITAESENAVAENAASGALADKRLTAKVKETIRVFNKHYLHLAQEEEERSAKAKAEAKKKESAKDDTQPKEKKISKRPDLKALTKMLKNNEILYHEKRIGNIPGIEVGYQFYSRAEMVAIGFHSHWLNGIDCMGKNYTKVYNDYQFPIAVAIVLSGMYEDDVDNAEDVVYTGQGGHDLNGDKRQIQDQKLERGNLALKNCSEQNVPVRVIRGHGSTSSYSRKVYTYDGLYKVVNYWTEKGISGYTVYKFRLRRMDGQPTLTTQQVYFTCGRVPQTVAELRGLVCEDITEGQEHVPIPVTNLVDDSPVPPTGFKYLKSLKVAKSVKIPANASGCKCKGKCIDPTTCECAKRNGSEFPYVSRDGDRLIEAKDVVFECGPNCGCDPGCLNRTSQKGLRYRLEVFRTAKKGWGVRSWDFIPSGAPVCEYTGILGRAGDMDSVLENNYIFEIDCLQTIKGLGVRERRSQNVAYAANLLDNYDGQDSEAPEFCIDAGSTGNIARFINHCCDPNLFVQCVLSTHHDLRLARVVLFAADNIPPLQELTYDYGCALDSVLDSDGKVKQMACYCGASGCRKRLF* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0680 719 SUPERFAMILY PUA domain-like 227 417 IPR015947 -
Tpr3g0680 719 Pfam SAD/SRA domain 244 402 IPR003105 -
Tpr3g0680 719 MobiDBLite consensus disorder prediction 53 72 - -
Tpr3g0680 719 ProSiteProfiles SET domain profile. 541 689 IPR001214 GO:0005515
Tpr3g0680 719 MobiDBLite consensus disorder prediction 53 132 - -
Tpr3g0680 719 SUPERFAMILY SET domain 423 695 IPR046341 -
Tpr3g0680 719 Pfam Pre-SET motif 432 533 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr3g0680 719 ProSiteProfiles Post-SET domain profile. 703 719 IPR003616 -
Tpr3g0680 719 SMART set_7 541 695 IPR001214 GO:0005515
Tpr3g0680 719 Coils Coil 188 208 - -
Tpr3g0680 719 SMART G9a_1 240 402 IPR003105 -
Tpr3g0680 719 Gene3D - 228 414 IPR036987 -
Tpr3g0680 719 Gene3D SET domain 422 719 IPR046341 -
Tpr3g0680 719 Pfam SET domain 552 689 IPR001214 GO:0005515
Tpr3g0680 719 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 68 718 - -
Tpr3g0680 719 MobiDBLite consensus disorder prediction 190 224 - -
Tpr3g0680 719 ProSiteProfiles Pre-SET domain profile. 476 538 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr3g0680 719 SMART preset_2 429 525 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr3g0680 719 ProSiteProfiles YDG domain profile. 245 398 IPR003105 -
Tpr3g0680 719 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 68 718 - -
Tpr3g0680 719 Coils Coil 139 159 - -
Tpr3g0680 719 MobiDBLite consensus disorder prediction 75 94 - -
Tpr3g0680 719 MobiDBLite consensus disorder prediction 118 132 - -
Tpr3g0680 719 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 85 719 IPR025794 GO:0016571
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0680 Tpr-Chr3 6559850 6562586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0680 231 719 EF-hand Containing Proteins AT5G13960 64.490 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr3g0680 SAD_SRA 1.6e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0680 K11420 - gmx:100795584 910.983