Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr3g0671 | ATGTGGGGATTGCTGATAAGAGAAGGTCGCAAAGCATCATCATCATCACCATGGAACCTAAACCTCATCCGTAACATGGGTGGCGGTCCTCGTACTTTCCCCGACGGCGTTAGCAAATGGAAATGGAAACGAATGCACGAAAAACGCGCCAAAGATAAACAGAAAAAACTTCTCGAACAAGAGAAACAAGTCTATCAAGGACGCATTCGATCTCTAATACGTTCAACTCTCTCACCTTCTTCTTCATCTTCATCTTCTACTCATAACCCTATTTCCCCTCATCAACATCTCAAAGCCCTCGCCGATCGTTTCATGAAAGACGGCGCTCAAGATCTCTGGAACGACTCCGACGGCCCATTAACCCCAATCGAAGCCCAGGACCAACCCCAGGCCCAAATTGAAGCCCGACCTTCGTCACAAATTGATTTGCGCAAACTCGCACACCAACCTTCAAATCGGAATTTGAATAATTTTTCACAAATTAGGGGTTTCCGTTCTGTTCCTGATGTTAGTGATTTGAGTGATAGGAAGCGTGATTTGAGTGATAGGAAGCGTGTTGGAACGGAAAAGAAAAGAATTTGGAGAAAGAATGATTCTTCTAGTGACGATGAGAGTGAGGATGAAGTTGAATCTCAGAATCAGGGTTATAATTCTAATGTGGGTAGTATTGCTTCTTTGGGTAAATATGATGTGAAGAGGGAGAGGAGAGTGATGCCTAAGAAATTTGATGATGGAACTGATTTTTCGGAGCAGGTTCAGTTGATTAAGTATGAGATTCGTAAGAAAAAGTTGAGTCAGAATAGGGAAAATCAGGTTGAGGAACAGGAAAACATTCTTAGTAAGACAAGATTTGACGAGTGTGCTATATCACCGTTGACAATCAAAGCACTTTCTTCATCTGGTTACATTCATATGACCCGGGTTCAAGAGACTAGCCTCCCTGTTTGTCTTGAGGATGTGGATGTTATGGTCAAGGCTAAAACTGGCACTGGAAAAACAGCAGCTTTTTTGCTTCCTGCTATTGAAACAGTTTTGAAAGCTATGAGTAGCAATACCTCTCATCGTGCGCCACCAATATATGTTCTTATTCTATGCCCTACCAGAGAACTTGCTAGTCAAATTGCTGCTGAAGCAAAGGTTTTGCTGAAATATCATGATGGCATTGGGGTGCAGACTTTAGTTGGAGGTGTACGATTTAAAGATGACCAAAAACGCCTTGAATCAGATCCATGCCAGATGCTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAGTCTGGAATATCTGTACGGTTGATGGGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTTGGGTTTCGAAAGGATATAGAAAAAATTGTTGATTGTTTGCCCCGGCAAAGGCAATCCTTGCTGTTTTCAGCAACCATGCCAAAGGAGGTCCGTCGGTTATCTCAGGTTGTTTTGAAAAGGGAACACAAATATGTTGATACATTTGGAATGGGCTGTGTGGAAACTCCTGTTCAAGTAAAACAATCCTATCTTATCGCTCCACATGAATCACACTTTCAGATAGTGCATCATATTTTGAAAGACCATATCTCACAAACACCTGATTATAAGGTTATTGTTTTCTGTACAACTGCGATGGTGGCATCACTCACGTATCACCTTCTTCGGGATATGAAACTGAACGTTAGGGAGATACATTCTCGAAAGCCTCAGCTGTATCAAACCCGCGTATCAGATGAGTTTAAGGAATCCAAACAAATGATTCTTGTCTCCTCCGATGTTGGAATAAGTTATCCTGACGTCACATTAGTCGTACAGGTGGGAATTCCTTCAGACCGTGAACAATACATACATCGTCTAAGAAGAACAGGACGGGAAGGCAAAGAAGGAAAAGGCATACTGTTGATTGCACCATGGGAAGAGTATTTTTTAAATAAGATCAAGGATCTTCCTCTAGAGAAATTCCCCTTGCCAGATTTAGATCCACAGGCACAGCTTAAGATTGAGCAATCAATGGCTAAGATTGATAAAGACATCAAAGAAGCAGCTTATCATGCTTGGCTTTGTTATTACAACTCCATCATGGAGATTGGGAGGGAGAAGACCACAGTAGCTGAGCTGGCAAACCAATTTTCTGAATCAATTGGTTTACAGACGCCGCCTTCACTCTTCCGAAAAACTGCACTAAAAATGGGTTTGAAAGACATTCCAGGCATTAGAATTCGCAGATAG | 2247 | 0.4206 | MWGLLIREGRKASSSSPWNLNLIRNMGGGPRTFPDGVSKWKWKRMHEKRAKDKQKKLLEQEKQVYQGRIRSLIRSTLSPSSSSSSSTHNPISPHQHLKALADRFMKDGAQDLWNDSDGPLTPIEAQDQPQAQIEARPSSQIDLRKLAHQPSNRNLNNFSQIRGFRSVPDVSDLSDRKRDLSDRKRVGTEKKRIWRKNDSSSDDESEDEVESQNQGYNSNVGSIASLGKYDVKRERRVMPKKFDDGTDFSEQVQLIKYEIRKKKLSQNRENQVEEQENILSKTRFDECAISPLTIKALSSSGYIHMTRVQETSLPVCLEDVDVMVKAKTGTGKTAAFLLPAIETVLKAMSSNTSHRAPPIYVLILCPTRELASQIAAEAKVLLKYHDGIGVQTLVGGVRFKDDQKRLESDPCQMLVATPGRLLDHIENKSGISVRLMGLQMLVLDEADHLLDLGFRKDIEKIVDCLPRQRQSLLFSATMPKEVRRLSQVVLKREHKYVDTFGMGCVETPVQVKQSYLIAPHESHFQIVHHILKDHISQTPDYKVIVFCTTAMVASLTYHLLRDMKLNVREIHSRKPQLYQTRVSDEFKESKQMILVSSDVGISYPDVTLVVQVGIPSDREQYIHRLRRTGREGKEGKGILLIAPWEEYFLNKIKDLPLEKFPLPDLDPQAQLKIEQSMAKIDKDIKEAAYHAWLCYYNSIMEIGREKTTVAELANQFSESIGLQTPPSLFRKTALKMGLKDIPGIRIRR* | 749 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr3g0671 | 748 | Coils | Coil | 254 | 274 | - | - | |
| Tpr3g0671 | 748 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 530 | 677 | IPR001650 | - | |
| Tpr3g0671 | 748 | Pfam | DEAD/DEAH box helicase | 306 | 484 | IPR011545 | GO:0003676|GO:0005524 | |
| Tpr3g0671 | 748 | MobiDBLite | consensus disorder prediction | 75 | 93 | - | - | |
| Tpr3g0671 | 748 | Gene3D | - | 248 | 497 | IPR027417 | - | |
| Tpr3g0671 | 748 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED | 29 | 747 | - | - | |
| Tpr3g0671 | 748 | Pfam | Helicase conserved C-terminal domain | 531 | 631 | IPR001650 | - | |
| Tpr3g0671 | 748 | Gene3D | - | 506 | 730 | IPR027417 | - | |
| Tpr3g0671 | 748 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 272 | 491 | IPR027417 | - | |
| Tpr3g0671 | 748 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 282 | 310 | IPR014014 | GO:0003724 | |
| Tpr3g0671 | 748 | SMART | helicmild6 | 554 | 632 | IPR001650 | - | |
| Tpr3g0671 | 748 | PANTHER | RNA HELICASE | 29 | 747 | - | - | |
| Tpr3g0671 | 748 | SMART | ultradead3 | 301 | 512 | IPR014001 | - | |
| Tpr3g0671 | 748 | MobiDBLite | consensus disorder prediction | 192 | 221 | - | - | |
| Tpr3g0671 | 748 | Coils | Coil | 43 | 63 | - | - | |
| Tpr3g0671 | 748 | MobiDBLite | consensus disorder prediction | 75 | 94 | - | - | |
| Tpr3g0671 | 748 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 313 | 496 | IPR014001 | - | |
| Tpr3g0671 | 748 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 438 | 646 | IPR027417 | - | |
| Tpr3g0671 | 748 | CDD | SF2_C_DEAD | 511 | 641 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr3g0671 | Tpr-Chr3 | 6502930 | 6507022 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr3g0671 | 273 | 657 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 25.990 | 6.61e-38 | 144 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr3g0671 | - | - | lang:109349967 | 1009.21 |