Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0668 ATGTCTTTCAGCGGAACCCAACAGAAATGCAAGACTTGTGATAAAACTGTTCACTTCGTTGATTCAATTTCTGCTGATGGTAGTGTTTATCACAAGAACTGCTTCAGATGTAGCCAATGCAATGGCCTTCTTGCGATGAGCACCTATTCATCACAGGAAGGAGTTTTGTACTGTAAGACTCATGCTGAGCAGCTTGCCAAGGAATCTGGCAATTTCGCCATGAAGAGATCCCTGTCAGCGGGATCGGGAAAGCCCAGCGAGCTGCCTAGGGCCCCAAGCAAGCTTTCTGCTTTCTTCTCGGGGACTCAAGAAAAATGTTCCGCATGCAAGAAAACCGTGTATCCATTGGAAAAGTTGACAGTGGAAGGTGAATTTTACCACAAATCATGCTTTAGGTGCACACATGGAGGATGTTTTCTGAGTCCTTCATCCTATGCTGCACTTGATGGATATATATACTGCAAGCCTCACTTTTCTCAGTTGTTTAAGGCTAAAGGTAGCTATAGCTATCTCTCCAAACAAGCTTCAATGAAGAAAAATGAAGAAAAAAAGGCTGCGGAGGAGAGAGCTGCTCTTGAATCAGCAGCAGAACCAGCACCAGAGGCAGCAGACACAGAGACAAAAGAAGAACAAGATCCTGCTGCTGAGACGCAAGAGGCGTAA 663 0.4525 MSFSGTQQKCKTCDKTVHFVDSISADGSVYHKNCFRCSQCNGLLAMSTYSSQEGVLYCKTHAEQLAKESGNFAMKRSLSAGSGKPSELPRAPSKLSAFFSGTQEKCSACKKTVYPLEKLTVEGEFYHKSCFRCTHGGCFLSPSSYAALDGYIYCKPHFSQLFKAKGSYSYLSKQASMKKNEEKKAAEERAALESAAEPAPEAADTETKEEQDPAAETQEA* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0668 220 Gene3D Cysteine Rich Protein 4 74 - -
Tpr3g0668 220 Gene3D Cysteine Rich Protein 100 170 - -
Tpr3g0668 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 72 - -
Tpr3g0668 220 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Tpr3g0668 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Tpr3g0668 220 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 217 - -
Tpr3g0668 220 PANTHER OS06G0237300 PROTEIN 1 217 IPR045268 GO:0051015
Tpr3g0668 220 MobiDBLite consensus disorder prediction 202 220 - -
Tpr3g0668 220 MobiDBLite consensus disorder prediction 179 220 - -
Tpr3g0668 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 170 - -
Tpr3g0668 220 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Tpr3g0668 220 SMART lim_4 9 61 IPR001781 -
Tpr3g0668 220 SMART lim_4 105 157 IPR001781 -
Tpr3g0668 220 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Tpr3g0668 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Tpr3g0668 220 Pfam LIM domain 10 62 IPR001781 -
Tpr3g0668 220 Pfam LIM domain 106 161 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0668 Tpr-Chr3 6478595 6480385 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Tpr3g0668 LIM 4.9e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0668 - K24413 gmx:100499865 304.293