Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0652 ATGATGGATAGTAGAGAGGCTATGTCATTCTCTGGTGTCCCTGGTTCATATTACATGCATAGAGGAGGGGTTGATGTTGTAGGGTCTGGTGGCTCTGGAGGGTTCCAAGTACCTCCTGGATTCAGAGCTATGCCAAACACTGGCATTATAGCTCAGCCAAATGTTAGGGGTCAAGGTAGTAATGTTGACTCTAGTTCAACATTTCCAATGGAGACTCAGTCTCATCACTCTCATGGCAATTTTAATCATGGCATTAATATTGGTGCATCTTCTGGGGGACCTTCTAGTGAGCCTGTGAAAAAGAAAAGAGGGAGACCGCGGAAATACGGTCCTGATGGATCGGTTTCTTTGAAACTGTCTCCAATGTCTGCCCCTGCTACTATTTCTACTCAGGGTTCATCCACACCTTCTGATAAACGGGGTAGAGGCCGCCCTCGTGGATCTGGAAGGAAACAACAGCTAGCAACATTAGGTGACTGGATGACCAGTTCAGCAGGGTTGGCTTTCTCGCCTCATGTTATCACCATTGGAGCTGGGGAGGACATCGCAGCAAAGCTATTGTCGTTATCACAGCAGAGACCAAGGGCTCTGTGCATCTTGTCGGGCACTGGGATAGTTTCTGCAGTTACTCTCCGACGACCTGCCTCTACCAATGCCGGTGTATCTTTTGAGGGAAAATTCCAAATATTAAGCTTGTCTGGTTCTTATTTGGTTGCTGAAGATGCTGGACCATCCACTAGAACGGGTGGCATAAGTGTTTCTCTTTCTAGCCGTGATGGTCATGTTATTGGTGGCGGCGTTGCTGTTCTTATTGCCGGAAGCCCAATACAGGTGGTGGTGTGCAGTTTTGTATACAGTGGTAGCTCAAAGGTAAAGACTATTAAGCAAGGGGCCACTACCACCAATGGTGAAAGTTCAGAGGCTCACGATGATAAGCTAGCTTCTCCAGCCAGTGCTCCACCTAGTCAAAACTACATCTCTTCTCCACCAGGCATGTGGCCCAGACCACAGGCATCAGACGTGAAAAGCGCGCACACACATACTGGCTTCGACTTGACAAGAGGATGA 1068 0.4822 MMDSREAMSFSGVPGSYYMHRGGVDVVGSGGSGGFQVPPGFRAMPNTGIIAQPNVRGQGSNVDSSSTFPMETQSHHSHGNFNHGINIGASSGGPSSEPVKKKRGRPRKYGPDGSVSLKLSPMSAPATISTQGSSTPSDKRGRGRPRGSGRKQQLATLGDWMTSSAGLAFSPHVITIGAGEDIAAKLLSLSQQRPRALCILSGTGIVSAVTLRRPASTNAGVSFEGKFQILSLSGSYLVAEDAGPSTRTGGISVSLSSRDGHVIGGGVAVLIAGSPIQVVVCSFVYSGSSKVKTIKQGATTTNGESSEAHDDKLASPASAPPSQNYISSPPGMWPRPQASDVKSAHTHTGFDLTRG* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0652 355 MobiDBLite consensus disorder prediction 87 153 - -
Tpr3g0652 355 MobiDBLite consensus disorder prediction 298 355 - -
Tpr3g0652 355 SUPERFAMILY AF0104/ALDC/Ptd012-like 169 285 - -
Tpr3g0652 355 Gene3D - 171 299 - -
Tpr3g0652 355 ProSiteProfiles PPC domain profile profile. 163 304 IPR005175 -
Tpr3g0652 355 Pfam Plants and Prokaryotes Conserved (PCC) domain 171 284 IPR005175 -
Tpr3g0652 355 CDD DUF296 171 283 IPR005175 -
Tpr3g0652 355 MobiDBLite consensus disorder prediction 120 138 - -
Tpr3g0652 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 2 355 IPR039605 GO:0003680
Tpr3g0652 355 MobiDBLite consensus disorder prediction 56 75 - -
Tpr3g0652 355 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 2 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0652 Tpr-Chr3 6367843 6371651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0652 2 355 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 45.780 1.31e-87 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0652 - - gmx:100798706 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0652 3 6367843 6371651 Tpr3g0652 3 6367843 6371651 ECH
Tpr2g3873 2 41490441 41494035 Tpr3g0652 3 6367843 6371651 PCT