Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0643 ATGGTGCAAGAAAATATGATGAAGGAACTACTTGCTTTGGCAGTTAGAAACATTCAATGGAGCTATATAATCTTCTGGTCTCAATCTGGTAGCCAACCTGGGGTGTTGAGTTGGGGGGAAGGATATTACAATGGAGAAATTAAGACAAGGAAAACAAGTCAAGAAGTGGAACTTAGTTCTGATGAAATAGGCTTGAAGAGGAGTGAGCAACTGAGAGATCTTTTCAGGTCCCTTAAACCTACAGAAACAAGTCCTCCAACAAAAAAGCCTTCTGCAGCACTTTCACCTGAAGACCTCACAGATACTGAGTGGTACTATTTGGTTTGTATGTCCTTTGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGCTTTAGCAAATGGTCAACCAATTTGGCTTATGGATGCCTATTCGGTTGATTGCAAAGAGTTTAGTCGCGCTCTCCTCGCAAAGAGTGCATCTATTCAGACAGTGGTGTGCTTTCCTTTTATGAAAGGGGTTATTGAGATAGGCACAACTGATATGGTAATGGAAGATCTCAGTATCATTCAACAGATCAAAACTTCTTTATCGAATATTCTAACTGTCGATGACCCTATTAACGGTCAAGTTACATTGAATTCGAGAAATAATGAAGATGTAGCATTTGATCATATTGATCACAATGCTGAATTAATTCCAGAAGTTGGTAATGACATAATCAACACAACAATATCTCGTAATGGCAGTTCAACTGCATTACAAACCAATCAACTACCAGATGAAACATTCATGGTTGAAAGCTGGCAAATTATGGATGATGATTTGATCCATAACTCCATGAATTCAAGTGATTGCATATCACAAACTATTGCTTCTGTTCCTAGAAGTGGAGAAGATTGCAACAATAACCAAATGACCTTAGGGTATCCACTAAGTTATGATTGCCATTATCAGAAAATTCTTTCAGAACTATTGACAAGCAATGACCAGTTAACTATGGGGATGCATTTTCAAAACTCTCATCAAGATTCAAGTTTTCGTGTTTGGAACAAAAGATGGCCAGTGGATTGCCAAAGGCCAAGACAAGGAAACTCACAAAAGCTATTGAAGAAGATGTTGTTAGAAGTTCCGCGGATGCACATGGATGGTTTGATTGAATCTCAAGAAGAGAATGACTATAGAGAAGCAACAAGACTAGAGCCTGATGAAGGTATGAACCATGTTTTGTCAGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACTCTTAGATCAATGGTACCTTCAAATAGTAAGGATGACAAAGTTTCTATACTAGATGATGCAATTGAATACCTTAGCAAGCTTGAAAAAAGGATAAAAGAGTTGGAAGCTCAAAGAGAACCAATAGATATAGTAGAGTCTAGAAGTAAAAAATCACATCATGATATGTTGGAGAGGACTTGTGATGACTATTATAACAACAAAACTAACAATGGCAAGAAACCAATGATGAAGAAGAGGAAAATATGTGACATAGGTGAAACAAGGAGACAGAATTGTTCTGATGCTTTAAAAGGAAGTTCTAATAGTGATGTTACTGTCAGTATGAGTGACAATGGAGTTGTGATTGAAATGAAGTGTCCTTCTAAATCAGGAAGGATATTGGAAATTATGGAGGCAGTTAACCATCTTAACATGGATTTTAATTCAGTTCAATCAACAGATTCTGATGGGAGGCTTCATGTGATCATTAGATCTAAGTTCAAAGGACCAGCTAATGCAACGACAAAAAGGATCAAACAAGCCCTACAAAAAGTGGCTTCAAAGTTTTGA 1803 0.3727 MVQENMMKELLALAVRNIQWSYIIFWSQSGSQPGVLSWGEGYYNGEIKTRKTSQEVELSSDEIGLKRSEQLRDLFRSLKPTETSPPTKKPSAALSPEDLTDTEWYYLVCMSFVFNIGQGLPGRALANGQPIWLMDAYSVDCKEFSRALLAKSASIQTVVCFPFMKGVIEIGTTDMVMEDLSIIQQIKTSLSNILTVDDPINGQVTLNSRNNEDVAFDHIDHNAELIPEVGNDIINTTISRNGSSTALQTNQLPDETFMVESWQIMDDDLIHNSMNSSDCISQTIASVPRSGEDCNNNQMTLGYPLSYDCHYQKILSELLTSNDQLTMGMHFQNSHQDSSFRVWNKRWPVDCQRPRQGNSQKLLKKMLLEVPRMHMDGLIESQEENDYREATRLEPDEGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLSKLEKRIKELEAQREPIDIVESRSKKSHHDMLERTCDDYYNNKTNNGKKPMMKKRKICDIGETRRQNCSDALKGSSNSDVTVSMSDNGVVIEMKCPSKSGRILEIMEAVNHLNMDFNSVQSTDSDGRLHVIIRSKFKGPANATTKRIKQALQKVASKF* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0643 600 Coils Coil 435 455 - -
Tpr3g0643 600 PANTHER TRANSCRIPTION FACTOR EGL1 5 596 - -
Tpr3g0643 600 PANTHER TRANSCRIPTION FACTOR TT8 5 596 - -
Tpr3g0643 600 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 399 457 IPR036638 GO:0046983
Tpr3g0643 600 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 188 IPR025610 -
Tpr3g0643 600 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 396 445 IPR011598 GO:0046983
Tpr3g0643 600 SMART finulus 402 451 IPR011598 GO:0046983
Tpr3g0643 600 Gene3D - 398 463 IPR036638 GO:0046983
Tpr3g0643 600 Pfam Helix-loop-helix DNA-binding domain 400 446 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0643 Tpr-Chr3 6290885 6295199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0643 2 597 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 42.879 1.75e-152 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr3g0643 bHLH-MYC_N 1.1e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0643 - - gmx:100808167 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0643 3 6290885 6295199 Tpr3g0643 3 6290885 6295199 ECH