Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr3g0628 | ATGGGCGGTTGTTGCTGTTGTGCTTCCAAGGAGACTGTATTGAGTGCTCCACCTGCTTACTATTATCAGTATCCAAGAGCATCTGAGGAGCATGTTCCGCTATCTTCTCACCAGGGTGCTCCCTCTGCTTTCTCTGGAAGGCTCTTGGTTGATACTAATCTAGATACTTCGAGTCCTGATACTTATAGACCACCTCCTGCTCCTCTCCCTTTCAACGTGACACCTGGTGCCACTCAGACTGCACCTGTGGCTCAAGAAATTAGCTGTGAGAAGAACAATACATCCTCGCTTTCTACAAATTCTAATTCAGTTCAAGAACCATCTGGAGATAATCATGGAACCTCACCTAAGTCGGAAGAACCGAAGGAATCAGAATGCAAAGGTCAGACTGATTTAGAGCTAGATTCGGCAAAGGATTCTGAAATTGAACTTTCAAAGTTAGGTGAACCTATAAATTTAGAGGAAGAGGAGGATACATGCCCAATATGTTTAGAAGAATATGATGCAGAAAATCCGAAACTCACCATAAACTGTGACCATCATTTTCACCTTGCTTGCATTCTGGAATGGATGGAAAGAAGTGAATCTTGCCCTGTCTGCGATCAGGTTATGGTTTTAAGCCCTTCCATTGTATAG | 636 | 0.434 | MGGCCCCASKETVLSAPPAYYYQYPRASEEHVPLSSHQGAPSAFSGRLLVDTNLDTSSPDTYRPPPAPLPFNVTPGATQTAPVAQEISCEKNNTSSLSTNSNSVQEPSGDNHGTSPKSEEPKESECKGQTDLELDSAKDSEIELSKLGEPINLEEEEDTCPICLEEYDAENPKLTINCDHHFHLACILEWMERSESCPVCDQVMVLSPSIV* | 212 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr3g0628 | 211 | ProSiteProfiles | Zinc finger RING-type profile. | 160 | 201 | IPR001841 | - | |
| Tpr3g0628 | 211 | MobiDBLite | consensus disorder prediction | 113 | 147 | - | - | |
| Tpr3g0628 | 211 | SUPERFAMILY | RING/U-box | 154 | 207 | - | - | |
| Tpr3g0628 | 211 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 206 | IPR013083 | - | |
| Tpr3g0628 | 211 | PANTHER | ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN | 1 | 210 | - | - | |
| Tpr3g0628 | 211 | MobiDBLite | consensus disorder prediction | 91 | 147 | - | - | |
| Tpr3g0628 | 211 | SMART | ring_2 | 160 | 200 | IPR001841 | - | |
| Tpr3g0628 | 211 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 210 | - | - | |
| Tpr3g0628 | 211 | MobiDBLite | consensus disorder prediction | 91 | 112 | - | - | |
| Tpr3g0628 | 211 | Pfam | Ring finger domain | 158 | 200 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr3g0628 | Tpr-Chr3 | 6165212 | 6168164 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr3g0628 | 1 | 210 | C3H Transcription Factor Family | AT5G41350 | 52.804 | 1.76e-63 | 194 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr3g0628 | - | - | gmx:100816369 | 331.257 |