Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0618 ATGGATATGTTATTGTTATTACTAGCTCTATTGGTTGCTTTTCCAAGCTTGACTACAGTCGAGAGCCGTAAAACACGGGTTCTGGACTATTTTGAGTACTGTGCCGTGAGCTGCAGAGCTTACAGTGCCTCGGTGACAGAATTTGGAGCCGTCGGTGATGGACAAACTTCGAACACTCAAGCCTTTCAGAAAGCCATTGATCATCTGAGTCAGTATTCATCAAATGGTGGCTCTCAACTTTATGTTCCACAAGGAAGATGGTTGACTGGTAGTTTCAATCTCACCAGCCATTTCACTTTATTCCTACACAAAGATGCTGTAATTCTTGGCTCTCAGGATGAAAGTGAGTGGCCGGTGATTGATCCCTTGCCGTCGTATGGTAGAGGGAGGGACACTCAGGGTGGAAGGTATAGCAGTCTAATTTTCGGAACCAACCTCACAGATGTTATCATAACAGGGGACAATGGTACATTAGATGGACAAGGTGAAGTTTGGTGGCAAAAGTTCCATAAGGGGGAGCTCAGTTATACTAGGCCTTACCTGATTGAAATCATGTACTCAAATAATATTCAGATATCAAATCTCACTTTGGTTAATTCTCCATCCTGGAATGTTCATCCTGTTTATAGCAGCAACATTATTGTTCAAGGCATCACGATTCTTGCTCCCGTGAATTCACCAAACACAGACGGGATCAACCCTGACTCTTGCACAAACACGCGGATTGAGGACTGTTATATAGTGTCCGGAGATGACTGTGTGGCTGTGAAGAGTGGTTGGGATGAGTATGGTATAGCTTATGGAATGCCAACTAAGCAGCTGGTAATAAGAAGACTCACTTGTATTTCTCCAAGCAGTGCTGTGATTGCTTTAGGGAGTGAAATGTCCGGTGGGATTGAAGATGTAAGGGCTGAGGATATTTTGGCGATCAACTCAGAATCGGGAGTCAGGATCAAAACTGCTGTTGGAAGAGGAGGATATGTCAGGGACATATATGTTAGAAGGATGACTATGAAAACCATGAAATGGGCATTTTGGATGACAGGAGATTATGGTTCTCATGCTGATAACAACTATGATCCTAATGCAATTCCTGTGGTTCAGAATATTAATTATCGCGATATGGTTGCTGAAAATGTGACTATGGCTGCAAAGTTAGAGGGTATATCTAATGCACCATTTACTGGAATCTGCATATCCAATGTAACCATTGGATTAGCCAAGAAGGCTAAAAAACTTCCGTGGAATTGCACCGATATTGCTGGGATTTCAAGTGGCGTGACTCCTGTGCCATGTGGCCTGTTGCCAGACCAAGGAACAGAGAATATTGGGTCATGCACCTTCCCAGAATACAAATTGCCCATCGAAGATGTTGAGGTTCGAACATGTACTTATAGAAGGAAGAGGCCTGCTATATGA 1419 0.4327 MDMLLLLLALLVAFPSLTTVESRKTRVLDYFEYCAVSCRAYSASVTEFGAVGDGQTSNTQAFQKAIDHLSQYSSNGGSQLYVPQGRWLTGSFNLTSHFTLFLHKDAVILGSQDESEWPVIDPLPSYGRGRDTQGGRYSSLIFGTNLTDVIITGDNGTLDGQGEVWWQKFHKGELSYTRPYLIEIMYSNNIQISNLTLVNSPSWNVHPVYSSNIIVQGITILAPVNSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPSSAVIALGSEMSGGIEDVRAEDILAINSESGVRIKTAVGRGGYVRDIYVRRMTMKTMKWAFWMTGDYGSHADNNYDPNAIPVVQNINYRDMVAENVTMAAKLEGISNAPFTGICISNVTIGLAKKAKKLPWNCTDIAGISSGVTPVPCGLLPDQGTENIGSCTFPEYKLPIEDVEVRTCTYRRKRPAI* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0618 472 Pfam Glycosyl hydrolases family 28 130 411 IPR000743 GO:0004650|GO:0005975
Tpr3g0618 472 Gene3D - 32 423 IPR012334 -
Tpr3g0618 472 PANTHER PECTIN LYASE-RELATED 5 467 - -
Tpr3g0618 472 SUPERFAMILY Pectin lyase-like 33 466 IPR011050 -
Tpr3g0618 472 Pfam Pectate lyase superfamily protein 44 100 IPR024535 -
Tpr3g0618 472 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 5 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0618 Tpr-Chr3 6055925 6059378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0618 31 468 Glycoside Hydrolase AT4G23500 74.201 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0618 - - gmx:100785841 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0618 3 6055925 6059378 Tpr3g0618 3 6055925 6059378 ECH
Tpr3g0618 3 6055925 6059378 Tpr5g1532 5 29262406 29264169 ECH