Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0616 ATGGGTCACCATTCTTGCTGCAATCAACAGAAGGTTAAGAGAGGTCTTTGGTCCCCTGAAGAAGATGAAAAACTCATCACTTACATTACTACTCATGGCTATGGTTGTTGGAGTGAAGTTCCTGACAAAGCTGGGCTTCAAAGGTGTGGTAAGAGTTGTAGATTGAGATGGATAAATTATTTGAGACCTGATATTAGAAGAGGAAGGTTTACACCTGATGAGGAGAAGTTAATTATTAGCCTTCACAACGTTGTAGGCAACAGATGGGCTCACATTGCAAGCCACTTACCAGGTAGAACGGACAATGAAATAAAGAACTACTGGAATTCTTGGATCAAAAAGAAAATCAGAAAACATAATTCAGCCTCTAATTCCTCAACCACCACCAATATTAACACACAAAATCATGTTCTTGATTTTACCTCCAATAATATTAAACTAGACCACTTTGCCAACCAAGATCAAAATGTAACAACAGCAAAACCAATATCATCATTTCAAGAAACAACTTTGTTTTCTCCCACATGCCCTTTATTTATGTTTGAGCCAAATTCACTACTACTACATGGAAGTGCAACAACAGAAGGTAATAATAACAATAATCATAATCTGCAAACAGATCAATATTTTCAAGATTCTGTTAATTTGATCAGCTCAGAAACATGGAATCAAGTTCAATCATCAGTATCATCACTACCTCCTCCAATATCATCAACAACTTCTTTTTCAATGGATACAATGAATATAAATTATCTACCACCTTTGATAGAGAATGTGGAAAACATGGAAGAAGAATCATGCTTTGATCATCAGAGGCAAGAGATGAATAACATTAACGATGAATGGCATCAACAATGTTCTAATAATAATAATAACAACTTTCTTTTCTGGGACAATATGGTTCATGGAAATGATCAACTTGGTGGGGAAGAACAACTAGCACCAAATTCAACAAATATGGGAACAAACACTATTACACTTTCTCCTTTTCCTTCTTCATCTTTTGGTTTATACTCACTCCACATACAGAGTTGCGGCAGAACTCATTTTCATCGCGCCACCATGATCATATCAGAGAAGAACCGCAGAGAGATCTCCAAATACCTCTTTCAAGAGGGTGTATGCTATGCCAAGAAAGATTACAATTTGGCAAAGCACCCAGAAATCGATGTTCCTAATTTGCAGGTCATTAAGCTTATGCAGAGCTTCAAATCCAGGGAATATGTTAGGGAAACCTTTGCTTGGATGCACTATTACTGGTTTCTCACTAATGATGGAATTGAGTTTCTCAGAACTTATCTTAATCTTCCTTCTGAGATTGTTCCTGCTACTTTAAAGAAACAGGCTAAGCCACCTGGTAGACCTTTTGGTGGTCCACCCGGTGATCGTCCTAGGGGTCCACCGAGATTTGATGGAGAGCGTAGATTTGGTGGTGACCGTGATGGCTACCGTGGAGGTCCTCGTGGACCTGGTGGTGAATTTGGAGGAGAAAAGGGAGGTGCTCCTGCTGATTACAGACCCTCATTTGGGGGTCCCGGTGGAAGGCCCGGCTTTGGTCGTGGGTCTGGTGGTTTTGGGGCTCCAACCAGCTCAGATGCTTAA 1602 0.3995 MGHHSCCNQQKVKRGLWSPEEDEKLITYITTHGYGCWSEVPDKAGLQRCGKSCRLRWINYLRPDIRRGRFTPDEEKLIISLHNVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKHNSASNSSTTTNINTQNHVLDFTSNNIKLDHFANQDQNVTTAKPISSFQETTLFSPTCPLFMFEPNSLLLHGSATTEGNNNNNHNLQTDQYFQDSVNLISSETWNQVQSSVSSLPPPISSTTSFSMDTMNINYLPPLIENVENMEEESCFDHQRQEMNNINDEWHQQCSNNNNNNFLFWDNMVHGNDQLGGEEQLAPNSTNMGTNTITLSPFPSSSFGLYSLHIQSCGRTHFHRATMIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGEFGGEKGGAPADYRPSFGGPGGRPGFGRGSGGFGAPTSSDA* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0616 533 Pfam Plectin/S10 domain 357 448 IPR005326 -
Tpr3g0616 533 PANTHER 40S RIBOSOMAL PROTEIN S10 273 528 IPR037447 -
Tpr3g0616 533 CDD SANT 69 112 IPR001005 -
Tpr3g0616 533 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr3g0616 533 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Tpr3g0616 533 MobiDBLite consensus disorder prediction 466 482 - -
Tpr3g0616 533 Gene3D - 355 458 IPR036388 -
Tpr3g0616 533 CDD SANT 17 61 IPR001005 -
Tpr3g0616 533 MobiDBLite consensus disorder prediction 445 533 - -
Tpr3g0616 533 Gene3D - 6 66 - -
Tpr3g0616 533 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 273 528 - -
Tpr3g0616 533 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr3g0616 533 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Tpr3g0616 533 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr3g0616 533 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr3g0616 533 Gene3D - 68 139 - -
Tpr3g0616 533 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr3g0616 533 SMART sant 66 114 IPR001005 -
Tpr3g0616 533 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0616 Tpr-Chr3 6042202 6050177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0616 1 311 MYB Transcription Factor Family AT1G63910 48.747 4.64e-86 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g0616 S10_plectin 1.4e-41 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0616 K09422 K02947 gmx:100803556 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0616 3 6042202 6050177 Tpr3g0616 3 6042202 6050177 ECH