Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0586 ATGTCTCCACCTTCCAATAACAACAAACACACTCATCATCACTACACACAAACCAAACTAATCAACAACTCAATGAACCATCTCTATCCCAAAACTGTACGAATACTTCTCACCGACAACGACGTAACCGACTCTTCTTCCGACGATGAACAACCACACCTCCGCCGTGTCAAAACCTTCGTCAAACAAATCACAATCCAAAAACAAAACAACAACATTACCAAGAATAAAACTAACAGACTCAAATCTAAAAAAACTCCGGCGACTCAACGCCGGCCGGTGATTTACTCCGGGAAGAAATACCGCGGAGTGAGACAGAGACCTTGGGGGAAATGGTCCGCGGAGATACGAGATCCTAAAATGCGCGTACGACGGTGGTTGGGAACTTACAACACTGCTGAAGAAGCTGCAATGGAGTATGATAAAGCTGCAATTGAAATTCGTGGCAAAGACGCGGTTACGAATTTTATTCAACCGATAGGGAAGAAAATTATAAACTCCGACGAAGAATGTTTCAGCAATAACGTTGTTTCTGCTACTTCAGTACTTAATCAGTGTTCTACTTGTTCTTCAGAAGGTGGTGAATCTGTTATAGTAAATGACAATGTTGTTGTTCATGATGTTCCAACAAATGATTCAAATGAATGTTCCTCTGTTTCGGGGAATTTGTTTGTAGAAGATGATAATAAGTTTAAATTTGAGTCAGTTTTTCCAATTTTTAGTGATACTTTGTTTGATGAGTTTGGAAGAAATGATGATTTATTTGATAATGAGGTAGAGTTGGAAAACATGTTCTTAGTCCCTGATGATGATGATTTTAATGGAAATTTTGTTGATACTTCCAATCAGAGTTTGAATTTGGATTCAACAGATTGGAACAGAGATTATACTAATTTTAAGGATATAGAGGATTTCTTTGGTTCGGATCATGTTACTGTCGTTTGA 945 0.382 MSPPSNNNKHTHHHYTQTKLINNSMNHLYPKTVRILLTDNDVTDSSSDDEQPHLRRVKTFVKQITIQKQNNNITKNKTNRLKSKKTPATQRRPVIYSGKKYRGVRQRPWGKWSAEIRDPKMRVRRWLGTYNTAEEAAMEYDKAAIEIRGKDAVTNFIQPIGKKIINSDEECFSNNVVSATSVLNQCSTCSSEGGESVIVNDNVVVHDVPTNDSNECSSVSGNLFVEDDNKFKFESVFPIFSDTLFDEFGRNDDLFDNEVELENMFLVPDDDDFNGNFVDTSNQSLNLDSTDWNRDYTNFKDIEDFFGSDHVTVV* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0586 314 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
Tpr3g0586 314 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Tpr3g0586 314 Pfam AP2 domain 100 149 IPR001471 GO:0003700|GO:0006355
Tpr3g0586 314 SUPERFAMILY DNA-binding domain 100 157 IPR016177 GO:0003677
Tpr3g0586 314 CDD AP2 99 156 IPR001471 GO:0003700|GO:0006355
Tpr3g0586 314 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 310 - -
Tpr3g0586 314 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Tpr3g0586 314 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Tpr3g0586 314 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 7 310 - -
Tpr3g0586 314 Gene3D AP2/ERF domain 99 158 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0586 Tpr-Chr3 5757029 5758073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0586 31 198 AP2-EREBP Transcription Factor Family AT4G27950 43.979 9.38e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr3g0586 AP2 6.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0586 - - mtr:MTR_8g099215 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0586 3 5757029 5758073 Tpr3g0586 3 5757029 5758073 ECH
Tpr2g3908 2 41792365 41794190 Tpr3g0586 3 5757029 5758073 PCT