Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0577 ATGGCTGACGTAGTTTCTGAAATCCCCACCAAGAAATCAAGAGGAACAAGAAAGGCTCTCAAGGAGAAAGCCTCAACCAATGATGCCAACATCGTGGCGAACGAGTCAACAATTTCACCCCTTTCTGATCAACCCAAGAAAGAAAAAGCTGCATCAAAGAAACAACAACAGCCAAAGCAACAATCTTTCGAACAAGATCTGCTCGAGATGCAGGAAAAGATGGAGCAGTTGCGTCTCGAGAAGGAGAAGACTGAAGAGTTGTTGAAAGCCAAAGATGAGATCTTGAAGCAAAAGGATGAAGAAATTGAAAATCGTGGTAAGGAACAGGAGAAACTTCAAGTTGAGCTTAAGAAATTGCAGAAGTTGAAGGAATTCAAACCCACCATGAATTTGCCTATGGTGAAAGACAAGGAACTAGAAAAGAAAGACAAGAAGAAGAATGCATGCCCTGAGAAAAAGAGGCCTACTCCAGCCTACATGTTATGGGTCAAGGACCAATGGCATGAGGTTAAGAAGGAGAATCCAGAGGCAGAATTTAAGGACATTTCAAACATGCTTGGTGCTAAATGGAAGACAGTTAGTGCAGAAGAGAAGAAGCCTTATGAGGAGAAATACCATGCTGAAAAAGAAGCTTATTTGCAAGTAATTACAAAGGAGAAGCGCGAGATTGAGGCAATGAAACTCTTGGAAGAAGAGCAGAAGCAGAAGACTGCTATGGAATTGCTTGAACAGTATATGCAATTCAAACAAGAGACAGAAAAAGAGAACAAGAAGAACAAGAAAGAAAAGGATCCATTGAAACCAAAGCATCCTATGTCAGCTTATTTCTTGTTTACTAATGATCGGAGAGCCGCTATTCGTGCAGACAACAAGGGTCTCATGGAGGTTTCCAAGATCACTTCTGAAGAGTGGAAAAACATGACTGAAGAACAAAAGAGGCCCTATGAAGAGATGGCAAAGAAGAACAAAGAGAAATATGCTGAAGAAATGGAAGCTTACAAACAGAAAAAAGAAGAGGAGGCTGCAAATCTAATGAAGGAAGAGGAAGAACATAAGAAACTTCAGAAACATGAAGCCTTGCAATTACTCAAGAAGAAGGAAAAAACTGAAAACATGATCAAGGAAACAAAATTGAATCGTCAGAAGAAGAAACAACATAGCAAGGAAGATAAAAACTCTGATCCAAACAAGCCTAAAAGGCCTGCATCCTCATATATTCTTTTCAGCAAAGAAGCAAGGAAGAACATATTAGAGGAACGTCCAGGACTTGGTGCAAACATGCTGACTACACTAATTTCATTGAAGTGGAAGGATATGAGTGAGGAAGATAAACAAGTGTGGAATGCCAAAGCATCTGAAGCAATGGATGCATACAAGAAGGAAATGGAGGAATACAACAAGTCAATTGCTGCAAAGCTGGAGCAGAAATCAGATGAAGAATAA 1443 0.3999 MADVVSEIPTKKSRGTRKALKEKASTNDANIVANESTISPLSDQPKKEKAASKKQQQPKQQSFEQDLLEMQEKMEQLRLEKEKTEELLKAKDEILKQKDEEIENRGKEQEKLQVELKKLQKLKEFKPTMNLPMVKDKELEKKDKKKNACPEKKRPTPAYMLWVKDQWHEVKKENPEAEFKDISNMLGAKWKTVSAEEKKPYEEKYHAEKEAYLQVITKEKREIEAMKLLEEEQKQKTAMELLEQYMQFKQETEKENKKNKKEKDPLKPKHPMSAYFLFTNDRRAAIRADNKGLMEVSKITSEEWKNMTEEQKRPYEEMAKKNKEKYAEEMEAYKQKKEEEAANLMKEEEEHKKLQKHEALQLLKKKEKTENMIKETKLNRQKKKQHSKEDKNSDPNKPKRPASSYILFSKEARKNILEERPGLGANMLTTLISLKWKDMSEEDKQVWNAKASEAMDAYKKEMEEYNKSIAAKLEQKSDEE* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0577 480 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 268 334 IPR009071 -
Tpr3g0577 480 MobiDBLite consensus disorder prediction 127 152 - -
Tpr3g0577 480 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 398 466 IPR009071 -
Tpr3g0577 480 Coils Coil 60 122 - -
Tpr3g0577 480 Coils Coil 316 357 - -
Tpr3g0577 480 MobiDBLite consensus disorder prediction 127 153 - -
Tpr3g0577 480 Pfam HMG (high mobility group) box 268 334 IPR009071 -
Tpr3g0577 480 Pfam HMG (high mobility group) box 398 466 IPR009071 -
Tpr3g0577 480 Pfam HMG (high mobility group) box 153 214 IPR009071 -
Tpr3g0577 480 SUPERFAMILY HMG-box 393 469 IPR036910 -
Tpr3g0577 480 MobiDBLite consensus disorder prediction 331 397 - -
Tpr3g0577 480 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 475 IPR044601 GO:0003677
Tpr3g0577 480 SMART hmgende2 151 221 IPR009071 -
Tpr3g0577 480 SMART hmgende2 267 335 IPR009071 -
Tpr3g0577 480 SMART hmgende2 397 467 IPR009071 -
Tpr3g0577 480 CDD HMGB-UBF_HMG-box 153 216 - -
Tpr3g0577 480 CDD HMGB-UBF_HMG-box 268 331 - -
Tpr3g0577 480 SUPERFAMILY HMG-box 141 214 IPR036910 -
Tpr3g0577 480 MobiDBLite consensus disorder prediction 10 24 - -
Tpr3g0577 480 CDD HMGB-UBF_HMG-box 398 463 - -
Tpr3g0577 480 Gene3D High mobility group box domain 147 228 IPR036910 -
Tpr3g0577 480 Coils Coil 216 262 - -
Tpr3g0577 480 Gene3D High mobility group box domain 251 349 IPR036910 -
Tpr3g0577 480 Gene3D High mobility group box domain 380 479 IPR036910 -
Tpr3g0577 480 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 152 220 IPR009071 -
Tpr3g0577 480 Coils Coil 448 479 - -
Tpr3g0577 480 MobiDBLite consensus disorder prediction 27 43 - -
Tpr3g0577 480 MobiDBLite consensus disorder prediction 331 406 - -
Tpr3g0577 480 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 475 - -
Tpr3g0577 480 MobiDBLite consensus disorder prediction 1 73 - -
Tpr3g0577 480 Coils Coil 359 386 - -
Tpr3g0577 480 MobiDBLite consensus disorder prediction 248 269 - -
Tpr3g0577 480 SUPERFAMILY HMG-box 255 341 IPR036910 -
Tpr3g0577 480 MobiDBLite consensus disorder prediction 248 274 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Tpr3g0577 HMG_box 1.1e-16 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0577 K09273 - gmx:100783033 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0577 3 5693363 5695904 Tpr3g0577 3 5693363 5695904 ECH