Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0560 ATGCTGTCTGATACTTTGTCTGGTACACCATGGTTGGCACCATCATCAATGTGTGAGATTATTTCATCGGCTATGATACCTGTTAAAGATAATTCGTTATTTTGGAGAGATTATTATTCTGAAATACAGTTGCAGTGGGATACTCCTGATTGTCGATATTGTGAGTACAGTGGAGGAAGATGTGGATTGGTTGCGGACCATGCTCTTAGCGTTGCTTGTTATGATCTTCCCACGTATCAAGGCCTATCGAAGAAAGTCAAGTATGGTTTAATTCTAGGTCTAGGAATACCTGGAATCTTAGGTATTATTGTGCTTACATGTATGTTATGCAACAAGAAGAACACAACTAATCAACTACATCGTCAAAGAGACACTGAATTCTCAACCATGATTATGCCACACCCCCCAATTGTAGTTATGGGCCTTGATGGGCCAACAATAGAAAGATATCCTAAAACCCAGCTTGGTGAAAGTGGACGATTGCCAAGGCCCAATGACAACATTTGCTCAATATGTCTTTGTGAATATCAACCCAATGAGGTATTGAGGACTATCCCAGAATGTGATCACTATTTTCATGTGAATTGTATAGATGGATGGCTCAAGAACAATGCTACTTGCCCTTTGTGTAGAAATTTTCCAGAGAGATCTACTTCATTTCCTTCTTTTTTGCATGTCACCAACTTCTTAATTACTAGTATTTTTATTGTATAG 714 0.3866 MLSDTLSGTPWLAPSSMCEIISSAMIPVKDNSLFWRDYYSEIQLQWDTPDCRYCEYSGGRCGLVADHALSVACYDLPTYQGLSKKVKYGLILGLGIPGILGIIVLTCMLCNKKNTTNQLHRQRDTEFSTMIMPHPPIVVMGLDGPTIERYPKTQLGESGRLPRPNDNICSICLCEYQPNEVLRTIPECDHYFHVNCIDGWLKNNATCPLCRNFPERSTSFPSFLHVTNFLITSIFIV* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0560 237 ProSiteProfiles Zinc finger RING-type profile. 169 211 IPR001841 -
Tpr3g0560 237 CDD RING-H2_PA-TM-RING 169 211 - -
Tpr3g0560 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 215 IPR013083 -
Tpr3g0560 237 SUPERFAMILY RING/U-box 164 216 - -
Tpr3g0560 237 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 14 222 - -
Tpr3g0560 237 SMART ring_2 169 210 IPR001841 -
Tpr3g0560 237 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 14 222 - -
Tpr3g0560 237 Pfam Ring finger domain 168 211 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0560 Tpr-Chr3 5536719 5539918 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0560 3 212 C3H Transcription Factor Family AT1G28040 35.426 4.52e-36 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0560 - - mtr:MTR_8g099495 344.739