Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0557 ATGGCTTCCTTAACTCTAGTATGTGTATTTTATGTCTTTATTATTTTCCAACTTCAAACTTCTAAAGCCAAACAAATAATCTGCAAAAAGTTATCATGCGGTGACATAGATATTGCTTTTCCTTTTGGTTTAATAGAAGCTAATCAAGATTTCCGTTGTAGCTATTTTGGAAATCCAGCCTTCCAACTTTCTTGTAACAACCAAAGCCAAACAATCCTCAATCTCCCCAAAACAAAATCCTTAATCATTAAAAACATCAATTACAAAACACAAACAATCCAAGTCAACGACCCCAAAGGATGTCTCCCAAAACGTTACTTCGACAACAATTTTAACCTTTCACGTTCACCTTTTAAATTAAACCCCGATATTTACAACACTGATGGTGATAATGTCACTTTCATTCGTTGTCCTTCCAACTTTACTACTGATTCATCACCATATCAATTTCCATTAGAACCAATTTCTTGTTTAAGCAACGATGAAGAACGTTCGAACTTGACTTTCTCTTCGGTTATAGTTTCATGGGTACCGACTGAATTTGTCCATACAAGGTGGTTTCAAACGTGTGAGGTGATTTCAACGGCTCTTGTTCCGTTACCATGGATGAATATGACTATGTGGCCATCTTGGCCTGATCTTAATAGTGATGTTGAGTTGGTGTGGAATGAACCTAGATGTAGGAATTGTGCACTTAATGGTCAAGTTTGTGGATTCTCTGAGGATACAAATATGCATCAAGTTCAATGTTTCCCTAATTCTTCCAATCAAGGACTCTTAGAAAGTGCCAAATACGGCATTGCTTTTGGATTGGGAATACCAGCACTTTTATTAATTGGCTTAGCTTGCTTTTGTAATAAGAGAACAACCCCACATCAAGGACAAAGAAACTCATCAAATGTTCCTACAATAACAATTTCCTTAGCACCACTCCCTTCATTTGTAACAGGCCTTGATGGTGCCACAATTGAAAAGTATCCCAAAACTCTTCTTGGAGAAAGTGGACGTTTATTGAAGTCTAATGACAATACATGCTCAATTTGTTTATCTGAATATCAACCTAAAGAGACCTTGAGAAGCATCCCAGAATGTAACCATTATTTTCATGCTGCTTGTATTGATGAGTGGCTCAAAATGAATGGTACATGCCCTATATGTAGGAATTCACCGGAGCCAGATGCTTCCACGAGTCCTTATTTTGCTTCGTTGTTGCTATCCCCAAATTCCTCATCATTGTCCTCTACTCGATAA 1251 0.3733 MASLTLVCVFYVFIIFQLQTSKAKQIICKKLSCGDIDIAFPFGLIEANQDFRCSYFGNPAFQLSCNNQSQTILNLPKTKSLIIKNINYKTQTIQVNDPKGCLPKRYFDNNFNLSRSPFKLNPDIYNTDGDNVTFIRCPSNFTTDSSPYQFPLEPISCLSNDEERSNLTFSSVIVSWVPTEFVHTRWFQTCEVISTALVPLPWMNMTMWPSWPDLNSDVELVWNEPRCRNCALNGQVCGFSEDTNMHQVQCFPNSSNQGLLESAKYGIAFGLGIPALLLIGLACFCNKRTTPHQGQRNSSNVPTITISLAPLPSFVTGLDGATIEKYPKTLLGESGRLLKSNDNTCSICLSEYQPKETLRSIPECNHYFHAACIDEWLKMNGTCPICRNSPEPDASTSPYFASLLLSPNSSSLSSTR* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0557 416 Pfam Wall-associated receptor kinase galacturonan-binding 28 97 IPR025287 GO:0030247
Tpr3g0557 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 392 IPR013083 -
Tpr3g0557 416 SMART ring_2 345 386 IPR001841 -
Tpr3g0557 416 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 415 - -
Tpr3g0557 416 ProSiteProfiles Zinc finger RING-type profile. 345 387 IPR001841 -
Tpr3g0557 416 Pfam Ring finger domain 343 387 IPR001841 -
Tpr3g0557 416 CDD RING-H2_PA-TM-RING 344 387 - -
Tpr3g0557 416 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 415 - -
Tpr3g0557 416 SUPERFAMILY RING/U-box 338 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0557 Tpr-Chr3 5527662 5530488 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0557 23 392 C3H Transcription Factor Family AT2G25410 35.065 3.96e-53 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0557 - - cam:101497311 495.352