Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0556 ATGGCTTCCTTAACTCTAGTATGTGTATTTTATGTCTTTATTATTTTCCAACTTCAAACTTCTAAAGCCAAACAAATAATCTGCAAAAAGTTATCATGTGGTGACATAGATATTGCTTTTCCATTTGGTTTAATAGAAGCTAATCAAGATCAAGATTTTCGTTGTAGCTATTTTCCAAATCCAATCTTCCAACTTTCTTGTAACAACCAAAGCCAAACAATCCTCAATCTCCCCAAAACAAAAAACTTAATCATTAAAAACATCAATTACAAAACCCAAACAATCCAAGTCAACGACCCCAAAGGATGTCTCCCAAAACGTTACTTCGACAACAATTTTAACCTTTCACATTCACCTTTTAAATTAAACCCCGATATTTACAACACTGATGGTGATAATGTCACTTTCATTCGTTGTCCTTCCAACTTTACTACCGATTCATCATCATCATCATATCAATTTCCATTAGAACCAATTTCTTGTTTAAGCAACGATGAAGAACGTTCAAACTTGACTTTCTCTTCGGTTATAGTTTCATGGGTACCGACTGAATTTGTGGATACAAGGTGGTTTCAAACGTGTGAGGTGATTTCAACGGCTCTTGTTCCGTTACCATGGATGAATATGACTATGTGGCCATCTTGGCCTGATCTTAATAGTGATGTTGAGTTGGTGTGGAATGAACCTAGATGTAGGAATTGTGCACTTAATGGTCAAGTTTGTGGATTCTCTGAGGATACAAATATGCATCAAGTTCAATGTTTCCCTAATTCTTCCAATCAAGGACTCTTAGAAAGTGCCAAATACGGCATTGCTTTTGGATTGGGAATACCAGCACTTTTATTAATTGGCTTAGCTTGCTTTTGTAATAAGAGAACAACCCCACATCAAGGACAAAGAAACTCATCAAATGTTCCTACAATAACAATTTCCTTAGCACCACTCCCTTCATTTGTAACAGGCCTTGATGGTGCCACAATTGAAAAGTATCCCAAAACTCTTCTTGGAGAAAGTGGACGTTTATTGAAGTCTAATGACAATACATGCTCAATTTGTTTATCTGAATATCAACCTAAAGAGACCTTGAGAAGCATCCCTGAATGTAACCATTATTTTCATGCTGCTTGTATTGATGAGTGGCTCAAAATGAATGGTACATGCCCTATATGTAGGAATTCACCGGAGCCAGATGCTTCCACGAGTCCTTATTTTGCTTCTTTGTTGCTATCCCCAAATTCCACATCATTGTCCTCTACTCGATAA 1263 0.3674 MASLTLVCVFYVFIIFQLQTSKAKQIICKKLSCGDIDIAFPFGLIEANQDQDFRCSYFPNPIFQLSCNNQSQTILNLPKTKNLIIKNINYKTQTIQVNDPKGCLPKRYFDNNFNLSHSPFKLNPDIYNTDGDNVTFIRCPSNFTTDSSSSSYQFPLEPISCLSNDEERSNLTFSSVIVSWVPTEFVDTRWFQTCEVISTALVPLPWMNMTMWPSWPDLNSDVELVWNEPRCRNCALNGQVCGFSEDTNMHQVQCFPNSSNQGLLESAKYGIAFGLGIPALLLIGLACFCNKRTTPHQGQRNSSNVPTITISLAPLPSFVTGLDGATIEKYPKTLLGESGRLLKSNDNTCSICLSEYQPKETLRSIPECNHYFHAACIDEWLKMNGTCPICRNSPEPDASTSPYFASLLLSPNSTSLSSTR* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0556 420 ProSiteProfiles Zinc finger RING-type profile. 349 391 IPR001841 -
Tpr3g0556 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 396 IPR013083 -
Tpr3g0556 420 Pfam Ring finger domain 347 391 IPR001841 -
Tpr3g0556 420 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 419 - -
Tpr3g0556 420 CDD RING-H2_PA-TM-RING 348 391 - -
Tpr3g0556 420 Pfam Wall-associated receptor kinase galacturonan-binding 28 99 IPR025287 GO:0030247
Tpr3g0556 420 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 419 - -
Tpr3g0556 420 SUPERFAMILY RING/U-box 342 399 - -
Tpr3g0556 420 SMART ring_2 349 390 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0556 Tpr-Chr3 5524069 5530600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0556 23 396 C3H Transcription Factor Family AT2G25410 34.190 2.18e-51 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0556 - - cam:101497311 482.256