Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0555 ATGTGTGAGGTGATTTCAACGACTTCTGTTCCGATACCGTGGAAGGATTTGAATATGTGGCCATTTTGGCGTGATATTAACAATGATGTTGAATTGGTGTGGACTAATCCTAGCTGTGGTAAGTGTGCACTTAATGGTCAATTTTGTGGGTTTTCTGAGGATTTTAAAAATAACCTTCAAGTTCAATGTTTTGACAGTTCCTCCAATCAAGGTCTCTCAAGAAGTGCCAAATTCGGTTTGGCAATAGGAGTGGGAATACCTGCATTTGTATGTCTAATTGGCTTTGCTTGCTTCTGTTGTGGTAAGAAGGGAACAACCCCACTTGATGGACAAAGAACCTCATCAAATGTTCCTACACTAACAATTTCCTTAGCACCACTCCCTTTATTTGTAACGGGCCTTGATGGTGCCACAATTGAAAAGTATCCCAAAACTCTTCTTGGAGAAAGTGGACGTTTATTAAAGCCTAATGACAACACTTGCTCAATTTGTTTATCTGAATATCAACCTAAGGATACCTTGAGAAGCATCCCTGAATGTAACCATTATTTTCAATCCTAG 561 0.3939 MCEVISTTSVPIPWKDLNMWPFWRDINNDVELVWTNPSCGKCALNGQFCGFSEDFKNNLQVQCFDSSSNQGLSRSAKFGLAIGVGIPAFVCLIGFACFCCGKKGTTPLDGQRTSSNVPTLTISLAPLPLFVTGLDGATIEKYPKTLLGESGRLLKPNDNTCSICLSEYQPKDTLRSIPECNHYFQS* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0555 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 186 IPR013083 -
Tpr3g0555 186 SUPERFAMILY RING/U-box 153 184 - -
Tpr3g0555 186 Pfam RING-like zinc finger 161 184 IPR001841 -
Tpr3g0555 186 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 185 - -
Tpr3g0555 186 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0555 Tpr-Chr3 5520616 5523919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0555 2 186 C3H Transcription Factor Family AT2G46495 33.333 4.55e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0555 - - cam:101497311 257.299