Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0546 ATGGAATCGGATTTTGAAACGAACGATATGCTCACACTGTCACAGGAGGATTCATTTGATACCAATGATAACAATGATAATTTAGATGCTGAAGGGGAAAGATGTGGAATATGTATGGATATGGTTATTGACAGGGGAGTACTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTTCCATCACTAATCTCTGCCCACTTTGCCAGAACGAGTTTCAGTTGATTACTTGTGTTCCAGTATATGATACCATAGGGAGCAATAAAGTTGAAGATGGCTCACTCTTCGGAGACGATGATGATGACTGGTCGATCGAAGGGGAGACTAACAGTCTGGCATTTCCCTCTTACTACATTGATGAAAATGCAGTTACATGCTTGGATGGTGATGGCTGCAAAATTCGAAATGGATTGGCAAGTATTGAAGGAGATTCTGGTCTTGATACATCAATCGCTTGTGATTCATGTGATATATGGTATCACGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCTGAGAGTACATGGTTATGCCCAAGATGTGTGGTTGATGAAGTTTCTAAAGAAACAGATACCAATTCAATAAAGGAGGCAACCCTGGAATGCAACCCAGATAACAATAACATTAAATGTCATGTTGAGGATTCCAGATTAGTGTCCGTGTCCATTGCTGATACTGGAGAGACCGCTGTTGTTGTCTCAATGCTTGACAGAAACAAATGGGTTCCAGAAACAAGCGAGAGAAGTCAATTGCCTCCTGAAGTTGATTTGTTGACTGAATCATGTAATTTAATGTCCCAAAAAAATAATCAGCTGCAGGGAACAGAGAAGACAACTATGTCACCGATCATGGAGGGAGAAAAACTAGAGCTGTCTTTATCACACAATATGTCATGTAACCCAACTTCTAAATCCTCCGTCCTAAATGATTTAAAGAAAAGTGATAATGGAACAAGATGTGAACCGAGTAGCTTTGACGGAGTCAAGTTATTTGATGAGTCCAATGTCAAAACTAGTCCATGCAAAATTGAATCTGATATGGGTCTTCATCTTGGTTTGTCGGTGGGCTCTTTTTTATCCGTTGATAATGTGAACAAGAGCAAAACACAAGATCAAGCAACTAATGTCCCGTGCTCGAGTCCAGAAGAATTTCTTTTGAAAGGAGATGAAATTGAAACCAATGCTTGTGAGGACAATGCCAGAGTGACTGGTAGAAAGAGGAAGCATGTTGATTTCAGTCACGAGCAAGTTCATATAAAAGTTGATGAAGATGCCAAGCCTGAACTATCGGCTGAAGCTTCACAAAAGAAAATTAGAGCGGCTGCTAATCAAATGATTAGTGCTAATGACTCGGTCGATACTCAACTTTCTGACAAAACTAAGAAGAGCCCTGTTTTAAAACATTCTCCAACAAAGGAAACTGTGGCATCAGATATAATGAATATCGTTAAAGGGACGAAACGTAGGCTTTCCAAGGGACTTGCGGGTACTAATGCTAGTGGAAAGTTAGCTGAAAAGAAAGAAAACATGGCTGGATTGAGGGTTAAAAAGATTATGAAGAGAGGTTCTGATGATGGAGAATCATCCTCATTAGTCCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGCAACAAATCCGATATAAACTTCGGGGAAAACCATTTTGATAAAAATCTTCTTGAAGCATTCAGGGCTGCTATAACAGGGCCTAAAACTGAACTTGTAAATAAGTTATCCCCCTCAGCTCTGAAGGCAAGGAAGTCAATGTTGCAGAAAGGAAAGGTACGAGAAAATCTAACTAGGAAAATTTTTGCATCATCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCACGAGAGCTTCAAAGCCTGAAAAGATCGAAACTTTAAAATCAGTTCTTGATCTCTTAAAAAAAAGTTCAGAGAACCCAGAATCAGAGCAAGCTCCTGAACGTCAGGCCAAGAATCCAATTCTCTCCAGATTGTATATAGCAGACACATCTGTTTTCCCACGGAAAGCTGATGTCAAACCTTTTTCAGAGCAGACTAAACAAAATAACTCATCAGTAAAAGGACCAAATCAATCTCTTGATATCAAGACTATTAAAGCAACAGAGGTAAATAATCTTTTATCAAAGACCAGCGTTTGCTCTTCTGAGAAAAAAGTAGATAAGAAGATTGTACGCGGTCCAGTTGGTAAAGCACATTTAAGCAGTCACTCAGAAGGGACATCAGTTTCTTCTTCAGCTGGTGCCAAAGTTGGCACAAAAGAGTCAGTCCTGAAATCCGATTCTATGAAAACTGATAAAAGAAAATGGGCCTTGGAGGTTCTTGCAAGGAAGACAGCTGTTGCAAGCAGTAACACAGCAAATGAAAGTCAGGAAGACGATGCAATTTTTAAAGGAAATTATCCTTTGCTTGCCCAATTACCAACTGATATGAGACCCGTGTTGGCACCTTGTCGCCACAATAAAATTCCTTTATCAGTGAGGCAGACACAGCTTTACCGCCTGACGGAACGCTTATTGAGGAACACAAATCTGACAATCATTCACAGAACTGCACATACAGAATTGGCTGTAGCAGATGCAATTAATATTGAAAAGGAGGTTGCTGACAGATCAAACAGCAAGCTAGTGTATCAGAATCTTTGTTCACAAGAGCTATTGCGTCGCACAAATAACACAACATCCAATGTAGACACAGACACAAGTCCACCAACCTCGTCGCCAGTGCATACTGATCAATCAGAACTGAATACCGATGATCTTTCTAGTGACCCAGCAGTGCATACTGATCAATCAGAACTGAATACTGATGATCTTTCTACTGACCCAGCAGTTCAAATAGCATTGCAAAATGCTGGTCTGTTGTCTGATTCGCCACCAAGCAGTCCACATAAGAACAAAGAAATACATAATGAAAATGAAATGTCAGGGCCTGATGATATACTTGAATTAGATTCTCATCCTGAACTGGATATATATGGTGATTTTGAGTATGATTTGGAAGAGGATGATTACATAGGCGCTAGTGTTACAAATATCCCAAACATAACACAAGAGCAAAGTGAACCAAAAGTGAAACTTGTTTTCTCCACCACGAGCTTGAAGAAAACAAATAATGCTTCGGATTCTGCAGACAGTATGGGGTCTGAAAACAATGAAGTGCCAGGAGATGCCTCTCGGTCACCAAACTGTCACAGTGATGCAGTCCACAGGGATTCTACCATTGATGCGGAGATTGGTCAGCCTTCTGCTTCTTCTGGGCTACAACCGTGTGAGGGTGCTGTTGAGCCGGTTGATTCAGAATTTGAAGAATTATATGGCCCTGATAAAGAACCACTTATAAAAAAGTTTCCAGATGGTGAATTACTATCACCACACGGAGAAGGCAAGACAGAAACTCAAAGCGAGAATAATGATTGCCATAAGGAGGAAGAACAGGTCTTAGACAAACTAGAAAATGGTGCTGAATTCAGGAATGGGAATCTTGCAGAAAATGCGTCTGTTTCCACTATCACGGACAAATCTAACGTATCTGGGACCGGTGAAAATTTTCAAAAGAAGGAGCAGTCTAACAATGAAAATCAAGTAGCGAAGAAGGTAGAAGCATACATCAAGGAGCATATCAGGCCATTGTGCAAGAGTGGTGTTATCTCGGCTGAACAGTACAGGTGGGCTGTTGCAAAAACAACTGATAAGGTTATGAAGTATCATTGCAAATCAAAGAATGCTAATTTCCTCATAAAGGAAGGCGAGAAAGTAAAGAAACTCGCAGAGCAGTATGTTGAAACAGCCCAACAGAATAGAAAAAGTTGA 3870 0.4044 MESDFETNDMLTLSQEDSFDTNDNNDNLDAEGERCGICMDMVIDRGVLDCCQHWFCFVCIDNWASITNLCPLCQNEFQLITCVPVYDTIGSNKVEDGSLFGDDDDDWSIEGETNSLAFPSYYIDENAVTCLDGDGCKIRNGLASIEGDSGLDTSIACDSCDIWYHAFCVGFDTEGTSESTWLCPRCVVDEVSKETDTNSIKEATLECNPDNNNIKCHVEDSRLVSVSIADTGETAVVVSMLDRNKWVPETSERSQLPPEVDLLTESCNLMSQKNNQLQGTEKTTMSPIMEGEKLELSLSHNMSCNPTSKSSVLNDLKKSDNGTRCEPSSFDGVKLFDESNVKTSPCKIESDMGLHLGLSVGSFLSVDNVNKSKTQDQATNVPCSSPEEFLLKGDEIETNACEDNARVTGRKRKHVDFSHEQVHIKVDEDAKPELSAEASQKKIRAAANQMISANDSVDTQLSDKTKKSPVLKHSPTKETVASDIMNIVKGTKRRLSKGLAGTNASGKLAEKKENMAGLRVKKIMKRGSDDGESSSLVQNLRKEIREAVRNKSDINFGENHFDKNLLEAFRAAITGPKTELVNKLSPSALKARKSMLQKGKVRENLTRKIFASSNGRRKRAWDRDCEIEFWKYRCTRASKPEKIETLKSVLDLLKKSSENPESEQAPERQAKNPILSRLYIADTSVFPRKADVKPFSEQTKQNNSSVKGPNQSLDIKTIKATEVNNLLSKTSVCSSEKKVDKKIVRGPVGKAHLSSHSEGTSVSSSAGAKVGTKESVLKSDSMKTDKRKWALEVLARKTAVASSNTANESQEDDAIFKGNYPLLAQLPTDMRPVLAPCRHNKIPLSVRQTQLYRLTERLLRNTNLTIIHRTAHTELAVADAINIEKEVADRSNSKLVYQNLCSQELLRRTNNTTSNVDTDTSPPTSSPVHTDQSELNTDDLSSDPAVHTDQSELNTDDLSTDPAVQIALQNAGLLSDSPPSSPHKNKEIHNENEMSGPDDILELDSHPELDIYGDFEYDLEEDDYIGASVTNIPNITQEQSEPKVKLVFSTTSLKKTNNASDSADSMGSENNEVPGDASRSPNCHSDAVHRDSTIDAEIGQPSASSGLQPCEGAVEPVDSEFEELYGPDKEPLIKKFPDGELLSPHGEGKTETQSENNDCHKEEEQVLDKLENGAEFRNGNLAENASVSTITDKSNVSGTGENFQKKEQSNNENQVAKKVEAYIKEHIRPLCKSGVISAEQYRWAVAKTTDKVMKYHCKSKNANFLIKEGEKVKKLAEQYVETAQQNRKS* 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0546 1289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 193 IPR013083 -
Tpr3g0546 1289 MobiDBLite consensus disorder prediction 1054 1078 - -
Tpr3g0546 1289 ProSiteProfiles Zinc finger RING-type profile. 35 74 IPR001841 -
Tpr3g0546 1289 Pfam Ring finger domain 34 74 IPR001841 -
Tpr3g0546 1289 MobiDBLite consensus disorder prediction 1054 1114 - -
Tpr3g0546 1289 MobiDBLite consensus disorder prediction 912 958 - -
Tpr3g0546 1289 PANTHER RING FINGER PROTEIN 41, 151 107 1285 - -
Tpr3g0546 1289 MobiDBLite consensus disorder prediction 1185 1213 - -
Tpr3g0546 1289 ProSiteProfiles Zinc finger PHD-type profile. 67 189 IPR019787 -
Tpr3g0546 1289 SUPERFAMILY RING/U-box 25 80 - -
Tpr3g0546 1289 SMART PHD_3 135 187 IPR001965 -
Tpr3g0546 1289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 95 IPR013083 -
Tpr3g0546 1289 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Tpr3g0546 1289 MobiDBLite consensus disorder prediction 1139 1165 - -
Tpr3g0546 1289 Pfam PHD-finger 152 187 IPR019787 -
Tpr3g0546 1289 MobiDBLite consensus disorder prediction 454 477 - -
Tpr3g0546 1289 PANTHER RING/U-BOX PROTEIN 107 1285 - -
Tpr3g0546 1289 MobiDBLite consensus disorder prediction 973 992 - -
Tpr3g0546 1289 SUPERFAMILY FYVE/PHD zinc finger 149 193 IPR011011 -
Tpr3g0546 1289 SMART ring_2 35 73 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0546 Tpr-Chr3 5457723 5467342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0546 35 86 C3H Transcription Factor Family AT3G58030 37.037 5.35e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr3g0546 PHD 2.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0546 - - gmx:100808102 1735.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0546 3 5457723 5467342 Tpr3g0546 3 5457723 5467342 ECH