Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0541 ATGCATAGTAATTTGGCGCCATTTTTCGTATATACTCTCCGAAGCCCCCATTTCTCCCACCTCCCCCATCGGTGCTTCCTCCCTCATTCATTCATTCCTCTCCACCAAACCCTAACTCGCACCTCCATTTTCAATCCTTCAATGGCTTCAACTCCAAAGAAGTCTCGTCAATCACCCTCAAAATCCAAGCTCCGTTCACCAATTGCAGCGCCCGTTACTCCACACTCGTTACCTACACGCAGATCCACGCGCTTAAGCTCTCTCCTCACCGATTCTCCTAAAACTCCCAATCTAGTTGATGCATTCAACGAAACTCCCAAGAGAAGGAGAAGAATTGGTGAGAAAACTGAGCCTGTGGCGAAATCGAGGCTCGATTTCTCTCATAAAGATAAAGTTTCAACTCGAAATAGTTCAATTAAGGTAGAAAATGAAAAAGATTCTGCTCAATTTTTGAAGACGAGAAGCAAGAAGAGTGAATCTGATGAAATTCCGTTTGCTCCACAATCGCCGGAGCAATCGAAATCTGTAAAGAGGAAGAGGAAAGAGGAGGGTGAGAAAACGATTGAACTGTCGAAGAAGAGAAATGGGAAGGATGAATTGTTTGCTCCAACGTCGCCGGATCAATCGGAAACTAAGAAGAGAAAGAGAAAGAATGAGGTTGAGAAAACGGTTGTTACTCGAGCTAAAGCTGCGAGAAAAGAGGGCAAAATTGCGAAGGTGCAGTATTATAAAAAAGTTGTTTATGATGGTGGTGAATTTGAAGTTGGGGATGATGTTTATGTGAAAAGGAGAGAAGATGCTACTTCTGATGAGGAAGATCCTGAAATGGAGGATTGTAAGTTATGTTTTAGTTCTGGGGATGAAATCATGATTGAGTGTGATAGTTGTTTGGGTGGGTTTCATTTGAAATGCTTGACGCCGCCGTTGAAGGATGTTCCTGAAGGGGATTGGATTTGTGAGATCTGCGAGGGTCGTAAGATGGGTAAAGATGTTGATTTCCCAAAGCCTCCGGAAGGTAAGAAGCTTGTTAGGACAATGCGTCAGAAGCTTCATTCAAGCGATTTGTGGGCTGCTCGAATTGAGAGTATATGGAAGGAAGTGGATGGCTGCTATTGGTGTCGGGTACGGTGGTATATGATTCCAGAAGAGACTTCTGTTGGGCGACAGCCACATAATTTGAGCAGAGAGTTATATCGGACCAATGATTTTGCAAAAATTGAGATGGAATCGGTTCTCAGACATTGTTTTGTCATGACCCCTAAGGAGTATGCCAAAGCTAGTAATGAGGGAGATGATGTTTTCTTGTGCGAATATGAATATGACATCCGTTGGCACAGTTTCAAACGCCTGGCTGATATTGATGATGAAAGAGAGAATTCTGATGAGGGTGACAGTGACGAAGACTGGAATGCAGGCAAGGAATCAGACTCTGATACAGATGAAGATGTTGACTATGAAGAGGAAAATATTAAAATTGCACAATCTCAACCACCAACAAGCCATCAGTTAGCTGCAAATCTGCACAAGGGACGGTTCTCTGGACTTCAGAAGATAGGCACAAAAAGAATTCCAGAGCATATAAGGTCTCACAAACAGACTAATCTTGAAAGAGCAAAGGCATCACTGTTATTAGCTTCGCTGCCTAAATCTTTACCTTGTAGAAATAAAGAAATGGACGAGATAACTACATTCATTAAAGGTGCTATTTCTGACAATCAATGTCTGGGTCGTTGCCTCTATATTCATGGTGTTCCGGGAACTGGCAAGACAATGAGTGTACTCTCAGTGATGAGGAGTTTGAGGTCAGAAGTTGATGCAGGAAACATCAAGCCGTACTGTTTTGTAGAGATTAATGGTCTGAAGTTGGCTTCGCCAGAGAATATTTATAAGGTCATATATGAGGCATTAAATGGTCACAGAGTCGGATGGAAAGAGGCTCTCCGTTTGCTGAATGAGAGGTTTGTAGAAGGGAAGAAAACTGGAGGAGAGGCTGACCGACCATGTATTTTGCTCATTGATGAACTTGATCTTCTTGTAACCAGAAACCAGTCGGTTCTGTACAATATCCTTGACTGGCCTACCAAGCCACATTCCAAGCTGATTGTGATAGGAATAGCAAATACAATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATCCAGAGGCTCTGCTTTGCCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCGAGTCGCCTCAATGGAATTGATATATTTGAAAAACAGGCTATGGAATTTGCTTCAAGAAAGGTTGCAGCTATCTCTGGAGATGCACGCCGTGCTTTGGAAATATGCAGACGTGCAGCTGAAATTGCAGATTATCGCATGAAGAAGCTAGCTTTAAATCCTGATAATGTTGCTGCAGGAAAGGGACTTGTTTGCATGGCAGACGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAGTGATGAAAAACTGTTCCAGACTTAGCAAAATTTTCCTGACAGCTATGGTGCACGAGCTTTACAAAACAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCAACGACGGTTTCATGTATCTGTACCAGCAACGGAGAAGTGTTTCCTGGATATGATATCCTCCTGCAAGTTGGCTGTAAGCTGGGTGAATGTAGGATCATTTTGTGTGAAGCAGGTGCCAAGCACAGGTTGCAAAAGTTGCAGCTAAATTTCCCGAGTGATGATGTAACCTTTTCACTGAGAGACTGCAAAGATCTACCTTGGTTGTCCAAATATTTAATGTAG 2799 0.4277 MHSNLAPFFVYTLRSPHFSHLPHRCFLPHSFIPLHQTLTRTSIFNPSMASTPKKSRQSPSKSKLRSPIAAPVTPHSLPTRRSTRLSSLLTDSPKTPNLVDAFNETPKRRRRIGEKTEPVAKSRLDFSHKDKVSTRNSSIKVENEKDSAQFLKTRSKKSESDEIPFAPQSPEQSKSVKRKRKEEGEKTIELSKKRNGKDELFAPTSPDQSETKKRKRKNEVEKTVVTRAKAARKEGKIAKVQYYKKVVYDGGEFEVGDDVYVKRREDATSDEEDPEMEDCKLCFSSGDEIMIECDSCLGGFHLKCLTPPLKDVPEGDWICEICEGRKMGKDVDFPKPPEGKKLVRTMRQKLHSSDLWAARIESIWKEVDGCYWCRVRWYMIPEETSVGRQPHNLSRELYRTNDFAKIEMESVLRHCFVMTPKEYAKASNEGDDVFLCEYEYDIRWHSFKRLADIDDERENSDEGDSDEDWNAGKESDSDTDEDVDYEEENIKIAQSQPPTSHQLAANLHKGRFSGLQKIGTKRIPEHIRSHKQTNLERAKASLLLASLPKSLPCRNKEMDEITTFIKGAISDNQCLGRCLYIHGVPGTGKTMSVLSVMRSLRSEVDAGNIKPYCFVEINGLKLASPENIYKVIYEALNGHRVGWKEALRLLNERFVEGKKTGGEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFAPYNYQQLQEIISSRLNGIDIFEKQAMEFASRKVAAISGDARRALEICRRAAEIADYRMKKLALNPDNVAAGKGLVCMADVEAAIQEMFQAPHIQVMKNCSRLSKIFLTAMVHELYKTGMGETTFEKLATTVSCICTSNGEVFPGYDILLQVGCKLGECRIILCEAGAKHRLQKLQLNFPSDDVTFSLRDCKDLPWLSKYLM* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0541 932 MobiDBLite consensus disorder prediction 45 64 - -
Tpr3g0541 932 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 212 927 - -
Tpr3g0541 932 SUPERFAMILY FYVE/PHD zinc finger 266 326 IPR011011 -
Tpr3g0541 932 MobiDBLite consensus disorder prediction 455 485 - -
Tpr3g0541 932 Gene3D - 729 802 - -
Tpr3g0541 932 MobiDBLite consensus disorder prediction 45 221 - -
Tpr3g0541 932 Gene3D - 212 467 IPR043151 -
Tpr3g0541 932 SMART AAA_5 575 729 IPR003593 -
Tpr3g0541 932 ProSiteProfiles BAH domain profile. 334 451 IPR001025 GO:0003682
Tpr3g0541 932 Pfam PHD-finger 279 323 IPR019787 -
Tpr3g0541 932 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 212 927 IPR020793 -
Tpr3g0541 932 ProSiteProfiles Zinc finger PHD-type profile. 276 325 IPR019787 -
Tpr3g0541 932 MobiDBLite consensus disorder prediction 457 485 - -
Tpr3g0541 932 MobiDBLite consensus disorder prediction 173 200 - -
Tpr3g0541 932 MobiDBLite consensus disorder prediction 103 161 - -
Tpr3g0541 932 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 339 IPR013083 -
Tpr3g0541 932 ProSitePatterns Zinc finger PHD-type signature. 279 322 IPR019786 -
Tpr3g0541 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 545 788 IPR027417 -
Tpr3g0541 932 Gene3D - 531 728 IPR027417 -
Tpr3g0541 932 Pfam ATPase family associated with various cellular activities (AAA) 580 725 IPR003959 GO:0005524|GO:0016887
Tpr3g0541 932 Pfam BAH domain 358 448 IPR001025 GO:0003682
Tpr3g0541 932 Pfam AAA lid domain 753 786 IPR041083 -
Tpr3g0541 932 SMART PHD_3 278 323 IPR001965 -
Tpr3g0541 932 MobiDBLite consensus disorder prediction 76 99 - -
Tpr3g0541 932 SMART BAH_4 251 451 IPR001025 GO:0003682
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0541 168 931 Core DNA Replication Machinery Family AT4G14700 67.010 0.0 1022
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr3g0541 AAA 2.7e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0541 K02603 - gmx:100798547 1314.29