Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0501 ATGACTACTGCAGAAGAAGGTACCTCCGCCGCCGTCGCCGTCGCCGCAGCTCCGGAAGGTGGTGGAGGAGGAGAGAAGAACGGCATAAACAGTGAGCTATGGCAAGCTTGTGCTGGTCCTCTTGTCAATCTTCCTTTAGCTGGAACTCATGTTGTTTACTTTCCTCAAGGCCACAGCGAACAAGTTGCAGCATCTTTGAAGAAAGATGGGGATGTGCAAGTACCAAACTATTCCAATCTTCCTTCCAAGTTACCGTGTATTCTTCACAGTCTTACCTTGCATGCAGATCCAGATACAGATGAAGTATATGCCCGTATGACACTTCAACCGGTGCCTTCTTTTGACATGGATGCCTTATTAAGATCAGATATTACTCTCAAGTCCAACAAGACACAACCCGAGTTTTTCTGTAAACAACTGACAGCAAGTGATACGAGTACTCATGGAGGTTTCTCTGTACCTCGCCGTGCTGCAGAGAAGATTTTCCCCCCTCTTGATTTCTCTGCGCAACCTCCTGCTCAAGAACTTGTGGCAAGGGATTTGCATGGTAACGTTTGGAAGTTCCGCCATATATATCGTGGACAACCAAAACGTCACTTGCTTACAACTGGATGGAGTCTATTTATCAGTGGAAAGAAGCTTTTAGCTGGAGACTCGGTTTTATTTATACGAGATGAAAAACAGCAGTTGCTTTTGGGTATCAGACGAGCAAACAGGCAACCGACCAATCTATCATCCTCAGTACTATCAAGCGATAGTATGCACATTGGAATTCTGGCTGCAGCAGCTCATGCTTCTGCAAACAATAGTCCCTTCACTGTGTTTTATAATCCTAGGGCCAGTCCCTCAGAGTTTGTTATTCCATTGGCCAAGTACTACAGGGCAGTATACAGCCACCAAATATCGCCTGGGATGCGCTTTCGAATGATGTTTGAAACAGAAGACTCGGGAACAAGAAGATATATGGGTACCGTTACAGGTGTCAGTGATCTGGATCCCGTGAACTGGAAAAACTCTCAGTGGCGTAATTTGCAGGTTGGTTGGGATGAATCCACTGCTGGAGAAAGGCGAAGTAGGGTCTCAATATGGGAAATCGAACCCGTTACTGCTCCATTTTTCATCTGTCCGCCTCCATTCATCAGATCAAAGAGACCAAGACTACCTGGAATGCCTGATGACGAGCTATTTAATGTCAGTAACCTTTTCAAAAGTTCAATGCCTTGGCTTGGTGATGATATGAGTATGAAGGATCCTCAGGCTTTCCCTGGCATGAGCTTAGCTCAATGGATGAGCTTACAGCAAAATCCCACTCTGGCTAGCTCATTGCAACAAAATCACGTGCCTTCCATGTCTGGATCTGTTCTACACAATCTTCCTGGAGCTGATATTGCTCATCAATTGGGATTCTCCACTCAACAAATCTCTCAACCAAACAATGTAGCTTTCAATGCTCCAGGGATACTTCAGACTCCCCAACAACTCGATCACCTTCAGAAGCTATCATCATCCACATCTAGCGGATTGGGAACAGTCATGCAGCCAGAGCAACATCATTCTAGACAGAACTTGGTAAATCAAACTTTACCACAAAGTCAAGTTCAGACTCATGTTCTTAATCCACAGAATGTCGTCCAAACGAACAATATACTTCAATCACAACAACAATCTGCTCAAAACCATCAACTCCATAGAAGCCTTTCTCAGAACCCTCTTCATCAGCAGCTTCAACAGACTATAATCGGTCAGAACCAACAGCAAAATATGATCAGATCAGCTATGCCAGATCATATTAATCAACAGTTACCTATGTCGGATAATCAAATTCGGATTCAGTTGTTACAGAAGCTTCAACAGCAACAACAAACATTCTTTGCTCAGCAATCTGCATTGCAGCAGCCTGCTCAACTTATTCAAAACCAAGAGCAGCAGAGGCAACTTTTAGATGTAACACACAACTCTAGGACATTAACTCCCAATCAAGTGTTTGAAATTCCTCCTACACTTCAAAACTCACTGCCTGGGACTAATTCCATGATCCATCAGATGACAGATCATAGTAGCCAAAACAATGTTCAGTTCTCTCATCCATCTAAGCAACCAAAACTTCAACATCAACCACAACAAATGCAACCTGACTCGGTTTCTAAAATGTCTAGTCATGTTGGACTTCCTCCTGCAACTACAACTAATCATTTATCTGCTTCTGGTAGCAGTACACGGACTGCAGCAACTGGAACAGGTCCATCGGTAGTTATTGATGATGTTCCATCTTGTTCCACTTCACCTTCCACAAATAACTGTGCCAATGTGCTTCCTCCAATGACAACATCCCACATCCTTATGAGCACAATAGGGGATGACGCGGCTCAGTCTTCTGCGACGATCTTGAGTCAAAATGCCTTAGAGACCATGCCATCTAGTGCAAATGTGGTAAAATTTGTACCTCCAAGATATGAAGCTAAGCCTTCTTTAAATCACAATCAAGGGAATTTTTACCCTCAGACTGGCTTGAACAGCGGTGCTGTCCAGACAGATTGTTTGGATACGTCGTCTTCTACAACTTCAGCTGGCCTTTCTCAGAGCGATACACGCTTTCATCAGAATGACAACCTGTTATCTTACAATCCACAATCGATGTTTTGTAGAGACAACATTCAAAATATGGAAGTTCAGGCTGATGCTAGGTCCAATATTGCATATGGCAACAGCATGAATGGGCAAATGAGAATGCCACCGAATCTAGACTCTACGGTAACCAAAGGCACAACAAGGTCGGGCAAGGATTTGTCAAATAATTTCTCTTCCTCAGGCTTGCTTGGTGACTATGAAAATAACAATGATGCTCAGCCTGAACTTTCATCTTCATTGGTTTCACAAACATTTGGAGTCCCTGATATGACCTTTAATTCAATTGATTCCACCATAAATGATAGTAGTTTCTTGAATAGTGGTCCATGGGCTCCACCGCCGCCGCCACATCAATTTCAACGGATTAGAACATATACCAAGGTATATAAACGTGGAGCTGTAGGAAGATCCATAGACATAACCAGATATTCAGGTTACGAGGAGCTCAAACATGATCTGGCTCGTAGGTTTGGTATTGAGGGACAGCTGGAGGATCGACAAAGGATAGGTTGGAAACTTGTTTATGTGGATCATGAAAATGATGTTCTGCTAGTGGGAGATGACCCTTGGGAGGAGTTTGTTAACTGCGTCCGCTGTATTAAAATACTCTCTCCTCAAGAAGTTCAACAAATGAGCATAGATGGAGATTTTGGCAACGGTGGCCTTCCAAAACAGGCTTGTAGCAGCTCTGATGGCGGGAATACTTAA 3336 0.4365 MTTAEEGTSAAVAVAAAPEGGGGGEKNGINSELWQACAGPLVNLPLAGTHVVYFPQGHSEQVAASLKKDGDVQVPNYSNLPSKLPCILHSLTLHADPDTDEVYARMTLQPVPSFDMDALLRSDITLKSNKTQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDFSAQPPAQELVARDLHGNVWKFRHIYRGQPKRHLLTTGWSLFISGKKLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHASANNSPFTVFYNPRASPSEFVIPLAKYYRAVYSHQISPGMRFRMMFETEDSGTRRYMGTVTGVSDLDPVNWKNSQWRNLQVGWDESTAGERRSRVSIWEIEPVTAPFFICPPPFIRSKRPRLPGMPDDELFNVSNLFKSSMPWLGDDMSMKDPQAFPGMSLAQWMSLQQNPTLASSLQQNHVPSMSGSVLHNLPGADIAHQLGFSTQQISQPNNVAFNAPGILQTPQQLDHLQKLSSSTSSGLGTVMQPEQHHSRQNLVNQTLPQSQVQTHVLNPQNVVQTNNILQSQQQSAQNHQLHRSLSQNPLHQQLQQTIIGQNQQQNMIRSAMPDHINQQLPMSDNQIRIQLLQKLQQQQQTFFAQQSALQQPAQLIQNQEQQRQLLDVTHNSRTLTPNQVFEIPPTLQNSLPGTNSMIHQMTDHSSQNNVQFSHPSKQPKLQHQPQQMQPDSVSKMSSHVGLPPATTTNHLSASGSSTRTAATGTGPSVVIDDVPSCSTSPSTNNCANVLPPMTTSHILMSTIGDDAAQSSATILSQNALETMPSSANVVKFVPPRYEAKPSLNHNQGNFYPQTGLNSGAVQTDCLDTSSSTTSAGLSQSDTRFHQNDNLLSYNPQSMFCRDNIQNMEVQADARSNIAYGNSMNGQMRMPPNLDSTVTKGTTRSGKDLSNNFSSSGLLGDYENNNDAQPELSSSLVSQTFGVPDMTFNSIDSTINDSSFLNSGPWAPPPPPHQFQRIRTYTKVYKRGAVGRSIDITRYSGYEELKHDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSIDGDFGNGGLPKQACSSSDGGNT* 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0501 1111 SUPERFAMILY CAD & PB1 domains 1012 1077 - -
Tpr3g0501 1111 Pfam AUX/IAA family 999 1084 IPR033389 -
Tpr3g0501 1111 Gene3D - 134 237 IPR015300 -
Tpr3g0501 1111 SUPERFAMILY DNA-binding pseudobarrel domain 126 265 IPR015300 -
Tpr3g0501 1111 ProSiteProfiles B3 DNA-binding domain profile. 136 238 IPR003340 GO:0003677
Tpr3g0501 1111 Gene3D - 994 1088 - -
Tpr3g0501 1111 ProSiteProfiles PB1 domain profile. 999 1083 IPR000270 GO:0005515
Tpr3g0501 1111 Pfam Auxin response factor 262 345 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr3g0501 1111 Pfam B3 DNA binding domain 136 237 IPR003340 GO:0003677
Tpr3g0501 1111 MobiDBLite consensus disorder prediction 1 23 - -
Tpr3g0501 1111 MobiDBLite consensus disorder prediction 684 747 - -
Tpr3g0501 1111 MobiDBLite consensus disorder prediction 684 746 - -
Tpr3g0501 1111 PANTHER AUXIN RESPONSE FACTOR 20 1105 - -
Tpr3g0501 1111 SMART B3_2 136 238 IPR003340 GO:0003677
Tpr3g0501 1111 Gene3D - 300 371 - -
Tpr3g0501 1111 CDD B3_DNA 135 227 IPR003340 GO:0003677
Tpr3g0501 1111 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 1105 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0501 Tpr-Chr3 5093760 5100073 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0501 24 488 B3 DNA Binding Superfamily AT1G19220 69.053 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr3g0501 AUX_IAA 5.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0501 - - ccaj:109803454 1530.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0501 3 5093760 5100073 Tpr3g0501 3 5093760 5100073 ECH