Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0489 ATGGGGAGAAGAAAGTGTTCACATTGTGGTAAGATAGGACATAATTGTAGGACATGCACATCCTTCACCCTTGGAGTTGGAGGACTTCGTCTCTTTGGTGTCCAACTATCCTCCTCTAATTCATCTAATCATAATAATTCTACCATCATCAAGAAAAGCTTTAGCATGGATACCTTTCCATCACCATCCTCTCCATCTTCTTCATTCTCTTCATCAACATCATTAACCAATATTGATGATAATCATCATCATCATCATCATCATCATCACAAATCTACCTCTACTAATATTGCCTATCTATCAGATTGTTTTATAGGTCCACCCCAAGAGAGGAAAAAAGGAGTTTCATGGACAGAAGATGAGCATAGAATGTTTATGGTTGGACTAGAGAAAATGGGAAAAGGAGATTGGAGAGGTATCTCTAAAAACTTCGTTCCCACAAGAACCCCAACACAAGTCGCGAGTCATGCTCAAAAATACTTTCTCCGATTGTCAACTATCAATAACAAGAAGCGACGTTCAAGTCTCTTTGACTTGGTTGGGAGCAAGAACACTAACACAAAAGTCCAAGGCAACGCTAATTCAATAGTTTTGAGTCATAAATCAGAGAATAAGTGTAAATGTGAAGTTGAGATTAATGATGGCACAACTTTCTTTAAACAAGAAGTAGTCAAATCAGATAAGCAAGAAACTAATTACTCTCAAGTTAATTGGCTACATAATCACTCTTCAAAGTATGCAACAGTGCCTTATTTGGACCTCACACTTGCAGTTGCACCCCCTAAGAAGACTAATAAGACCACCCAAGCTGGCCCATTGCTTTTTGGCCCAATTAGTGTCACTTAA 846 0.3842 MGRRKCSHCGKIGHNCRTCTSFTLGVGGLRLFGVQLSSSNSSNHNNSTIIKKSFSMDTFPSPSSPSSSFSSSTSLTNIDDNHHHHHHHHHKSTSTNIAYLSDCFIGPPQERKKGVSWTEDEHRMFMVGLEKMGKGDWRGISKNFVPTRTPTQVASHAQKYFLRLSTINNKKRRSSLFDLVGSKNTNTKVQGNANSIVLSHKSENKCKCEVEINDGTTFFKQEVVKSDKQETNYSQVNWLHNHSSKYATVPYLDLTLAVAPPKKTNKTTQAGPLLFGPISVT* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0489 281 CDD SANT 116 161 IPR001005 -
Tpr3g0489 281 ProSiteProfiles Myb-like domain profile. 109 161 IPR001005 -
Tpr3g0489 281 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 268 - -
Tpr3g0489 281 SMART sant 113 163 IPR001005 -
Tpr3g0489 281 Gene3D - 115 168 - -
Tpr3g0489 281 PANTHER TRANSCRIPTION FACTOR KUA1 3 268 - -
Tpr3g0489 281 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 112 163 IPR006447 GO:0003677
Tpr3g0489 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 165 IPR017930 -
Tpr3g0489 281 SUPERFAMILY Homeodomain-like 110 165 IPR009057 -
Tpr3g0489 281 Pfam Myb-like DNA-binding domain 116 161 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0489 Tpr-Chr3 4975321 4976897 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr3g0489 Myb_DNA-binding 9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0489 - - cam:101500241 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0489 3 4975321 4976897 Tpr3g0489 3 4975321 4976897 ECH