Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0477 ATGGTGGAGAAGACCAGCGCCGGTAGGAAAGAGGAGGTTGTTACCAGGGAATACACCATCAACCTCCACAAACGCCTCCATGGCTGCACATTTAAGAAGAAGGCTCCTAAGGCGATCAAGGAGATAAGGAAGTTTGCCCAAAAGGCTATGGGCACCAATGATGTCCGAGTGGATGTCAAGTTGAACAAAGCTATATGGAGCCAGGGGATCAGAAGTGTCCCAAGGAGGGTTAGAGTGCGCATTGCCCGCAAGAGAAACGATGATGAGGATGCTAAGGAAGAGCTCTACTCACTTGTCACAGTTGTTGAAATCCCCAAGGAAGAGCTCAAAGGTTTGGGCACTAAGGTTATTGATGATGAGGATTGA 366 0.4863 MVEKTSAGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTNDVRVDVKLNKAIWSQGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVVEIPKEELKGLGTKVIDDED* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0477 121 ProSitePatterns Ribosomal protein L31e signature. 55 69 IPR020052 GO:0003735|GO:0005840|GO:0006412
Tpr3g0477 121 PANTHER 60S RIBOSOMAL PROTEIN L31 1 121 IPR000054 GO:0003735|GO:0005840|GO:0006412
Tpr3g0477 121 SMART Ribosomal_L31e_2 11 94 IPR000054 GO:0003735|GO:0005840|GO:0006412
Tpr3g0477 121 Gene3D - 9 121 IPR023621 -
Tpr3g0477 121 PANTHER OS06G0319700 PROTEIN 1 121 - -
Tpr3g0477 121 CDD Ribosomal_L31e 10 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
Tpr3g0477 121 Pfam Ribosomal protein L31e 12 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
Tpr3g0477 121 SUPERFAMILY Ribosomal protein L31e 12 93 IPR023621 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0477 Tpr-Chr3 4859276 4860557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0477 8 121 Cytoplasmic Ribosomal Protein Gene Family AT4G26230 82.456 2.84e-67 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0477 K02910 - gmx:100499742 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0477 3 4859276 4860557 Tpr3g0477 3 4859276 4860557 ECH