Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0473 ATGTCGATGATGTTAGGGGAACCACCCCACCGTACAAATCCAACCGTACACGTGCCACAATGGCCAAATCCCACGGCGGAGATTTTTTCTCCTTTAACCGCTAATGAAGATTATTCTCAGTTCTACTTGCAAGAAGCGCTTAGCGCTCTTCAACACTATCTTCCAGAACATGACGACGCCGATTCTGACTCGGAGATTTTTCCGAGTCATGAATCAGTGGATGCATACTCCAATGATCATTTCCGCATGTTCGAGTTCAAGATTCGAAGATGCGCACGTGGAAGATCACATGACTGGACGGAGTGTCCTTTTGCTCATCCCGGCGAGAAAGCTCGCCGCCGTGATCCGAGGAAGTTTCACTATTCCGGCACTTCGTGTCCTGATTTTCGTAAAGGAAGTTGTAAGAAAGGTGATTCGTGTGAATTCGCGCATGGAGTTTTTGAGTGCTGGCTTCATCCTGCACGTTACCGTACTCAGCCGTGTAAAGACGGTACTAGTTGCCGCCGGCGAGTTTGTTTTTTCGCTCACACGACGGAGCAACTTAGGGCTCCGACTCAACAGAGTCCAAGGAGTGTTAACTCTACTGATTCCTACGACGGTTCTCCTCTCCGTCTAGGGATTGAATCATCCTGTGTGAAAACGCTGCCGTTTATTTCTTCTCCTGGATCTGTTTCTCCGGTGGAGTCTCCTCCGGTGTCTCCGATGACTCGGTCATTGGGAAGGTCTATGGGTTCTGTGAATGAGATGGTTGCTTCTATAAGAAACTTGCAACTTGATAAGATGAAATCGTTACCTCCTTCTTGGAATTGTCAAATGGGTTCTCCTAGATTCGGATCTCCGAGAGGACCCATGATCCGACCCGGTTTCTGTAGCTTACCGTCAACTCCTACCAAGCCGCGGAGTCGCGGCGGGGTTAACCATTTTGATCTCTGGGATCAGTGCTGTGAGGAGGAGCCTGTGATGGAGAGGGTGGAATCTGGTAGGGATATAAGGGTTAAGATGTTTGAGAAACTGAGCAAAGAAAACTCTTTGGATAGGTTGGGTTCGGGTATGGATTCGAGTCGGGTGGATGTTGATGGGGCTCCGGATGTTGGATGGGTTTCTGAGCTGGTGAGTCCTTTCTTGGGTTGA 1131 0.4916 MSMMLGEPPHRTNPTVHVPQWPNPTAEIFSPLTANEDYSQFYLQEALSALQHYLPEHDDADSDSEIFPSHESVDAYSNDHFRMFEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTSCPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTTEQLRAPTQQSPRSVNSTDSYDGSPLRLGIESSCVKTLPFISSPGSVSPVESPPVSPMTRSLGRSMGSVNEMVASIRNLQLDKMKSLPPSWNCQMGSPRFGSPRGPMIRPGFCSLPSTPTKPRSRGGVNHFDLWDQCCEEEPVMERVESGRDIRVKMFEKLSKENSLDRLGSGMDSSRVDVDGAPDVGWVSELVSPFLG* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0473 376 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 10 371 - -
Tpr3g0473 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 126 145 IPR000571 GO:0046872
Tpr3g0473 376 Gene3D - 121 184 - -
Tpr3g0473 376 ProSiteProfiles Zinc finger C3H1-type profile. 121 147 IPR000571 GO:0046872
Tpr3g0473 376 PANTHER UNKEMPT FAMILY MEMBER 10 371 IPR045234 -
Tpr3g0473 376 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Tpr3g0473 376 SMART c3hfinal6 155 178 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0473 Tpr-Chr3 4831238 4832809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0473 76 263 C2H2 Transcription Factor Family AT5G12850 50.515 3.22e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr3g0473 zf-CCCH 3.6e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0473 3 4831238 4832809 Tpr3g0473 3 4831238 4832809 ECH