Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0468 ATGAAAACAAAAACAGAAAAAGGAAGAGTTAGAATTTGCTTTCGCTTTCTCGATCCCTCTCTCTCAAAATCGCTGTTCCTCTCTCACCCACCGCCACCGGCCGCCGCTCTCAATCCCTCTCTCACTGCTCTCAATCTCTCTCCCTCACCTCGCCGTAACGCCGTTCAATCTTCCGCCGCAGCCGCACCACTGCTCAGCTCACCGCGCCGCACCACACCGCACCGCACTCACTCTTTCTCTTCGTCTCGTTTCAGGTTTTTGTGCACCTCCAAATCCTTCAGCTCCAAGATGTTTGGTTTTCGCCGAATTGTTTCTAATGTTGCTGTCTGCCTTCGTCAAAACCTATCGCTTCGTGGCTGTGTGCAAGTACGAAATATAAACATTGGAGGTGGTCTTGGAGGTGAGATTCCAGACGGCAAGCGACTTTCGTATGCTCTTCAGCATATCCACGGGATTGGCCGTGCAAAAGCTCATCACATTGTGTGTGAGCTTGGAGTTGAAAACAAATATGTGAAGGACCTAAGCAAAAGAGAACTATATTCTCTTCGTGAATTGCTTTCCAAGTACTTGATTGGAAATGATTTGAAAAAGTTAGTTGAGAGAGATGTGGCAAGGTTGGTGGGTATTCAATGCTACAGAGGGATCAGGCACGTCGATGGCTTACCCTGTCGGGGACAGCGAACTCATACAAATTCTCGCACTAGGAAGAAAATGCCTACTTACCGGGGTTCAAGATAA 738 0.481 MKTKTEKGRVRICFRFLDPSLSKSLFLSHPPPPAAALNPSLTALNLSPSPRRNAVQSSAAAAPLLSSPRRTTPHRTHSFSSSRFRFLCTSKSFSSKMFGFRRIVSNVAVCLRQNLSLRGCVQVRNINIGGGLGGEIPDGKRLSYALQHIHGIGRAKAHHIVCELGVENKYVKDLSKRELYSLRELLSKYLIGNDLKKLVERDVARLVGIQCYRGIRHVDGLPCRGQRTHTNSRTRKKMPTYRGSR* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0468 245 ProSitePatterns Ribosomal protein S13 signature. 213 226 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tpr3g0468 245 MobiDBLite consensus disorder prediction 229 245 - -
Tpr3g0468 245 MobiDBLite consensus disorder prediction 57 76 - -
Tpr3g0468 245 Gene3D 30s ribosomal protein s13, domain 2 199 241 IPR027437 -
Tpr3g0468 245 ProSiteProfiles Ribosomal protein S13 family profile. 132 237 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tpr3g0468 245 Pfam Ribosomal protein S13/S18 133 234 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tpr3g0468 245 PANTHER SMALL RIBOSOMAL SUBUNIT PROTEIN S13, MITOCHONDRIAL 102 239 - -
Tpr3g0468 245 Gene3D - 132 197 - -
Tpr3g0468 245 Hamap 30S ribosomal protein S13 [rpsM]. 122 244 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tpr3g0468 245 SUPERFAMILY S13-like H2TH domain 133 238 IPR010979 GO:0003676
Tpr3g0468 245 MobiDBLite consensus disorder prediction 225 245 - -
Tpr3g0468 245 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 102 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0468 Tpr-Chr3 4768398 4771909 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0468 138 233 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 31.405 7.82e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0468 K02952 - gmx:100527465 225.328