Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0460 ATGCAGAAAACAATGATTCTGTCTATTCTCCATATCCTTCTTCTCCTCTTTCCAAATGCAGCAAAAGCTTCCATTGGTATAGGCATTGGTGTTGGCATTGGCATTGGCACTGGCAATGGTGGTGTTGGTGCTAACACTCCATTGCCTTCAGGATCAAATCTAAACAATGCTTACACAGCTCTTCAAGCTTGGAAAACTTCAATCACGGATGACCCTTTGAAGATTTTAGACACATGGATTGGTTCTAATGTTTGTTCCTATAAAGGAATCTTTTGTGACACTAGTGAAACTCCTTTTGTTGCAGGAATAGATCTCAACCATGCAAATCTTCAAGGAACACTTGTAAAAGAACTCTCTTTACTATCTGATATAACACTTCTTCATCTCAACAGTAACAAATTTTCTGGTACAGTTCCTGATACATTCAAAGACTTTACCTTTCTTCAAGAACTAGACTTAAGCAATAACCAACTTTCAGGTTCTTTCCCTACAGTTACTTTAGACATGCCAAGTTTAGTTTACTTGGATCTTAGATTCAATAATTTCAAAGGGTCACTTCCTGAAGAACTTTTCAATAAGAAACTAGATGCAATATTTCTCAACAACAATCAATTTAGTGGTGAAATTCCACAAAGCTTTGGTAACTCACCTGCATCAGTGATCAATTTAGCTAACAACAAACTAAGTGGAAATATACCAGCAAGTTTTGGTTTTATGAGTTCTAAGTTAAAAGAGATTCTTTTTCTTAATAATCAGTTAACAGGTTGTATTCCTCAAGGTGTTGGTATATTCACAGAAATGCAGGTTCTTGATGTGAGTTTTAATTCACTTGTAGGTCATTTGCCAGATACAATATCTTGTTTGCAAGATATTGAGGTTCTTAATTTAGGACATAACAAGCTTTCTGGTGATATATCTGATGTGATATGTTCTTTGAGAAGTTTGTTGAATTTAACTGTTGCTTATAATTTCTTTTCTGGGTTTAGTCAAGAATGTTCAAGGCTTTTCAATATTGGTTTTGATTTTACAGATAATTGTATTCCTGGTAGGAATATGCAGAGACCTTCACCTGAATGTTCTGTGATCCCTGATGTTAATTTGAATTGTCTTAGAATTCCTACTCCAAAACCTCTTGTTTGTGGTACATTGGCTTCAAGAGCTTCTAATTTTAAGTACACAAATATTCATTCATCATCTCCCTGA 1203 0.3491 MQKTMILSILHILLLLFPNAAKASIGIGIGVGIGIGTGNGGVGANTPLPSGSNLNNAYTALQAWKTSITDDPLKILDTWIGSNVCSYKGIFCDTSETPFVAGIDLNHANLQGTLVKELSLLSDITLLHLNSNKFSGTVPDTFKDFTFLQELDLSNNQLSGSFPTVTLDMPSLVYLDLRFNNFKGSLPEELFNKKLDAIFLNNNQFSGEIPQSFGNSPASVINLANNKLSGNIPASFGFMSSKLKEILFLNNQLTGCIPQGVGIFTEMQVLDVSFNSLVGHLPDTISCLQDIEVLNLGHNKLSGDISDVICSLRSLLNLTVAYNFFSGFSQECSRLFNIGFDFTDNCIPGRNMQRPSPECSVIPDVNLNCLRIPTPKPLVCGTLASRASNFKYTNIHSSSP* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0460 400 Gene3D Ribonuclease Inhibitor 55 219 IPR032675 -
Tpr3g0460 400 Pfam Leucine rich repeat 125 182 IPR001611 GO:0005515
Tpr3g0460 400 Gene3D Ribonuclease Inhibitor 220 369 IPR032675 -
Tpr3g0460 400 Pfam Leucine rich repeat N-terminal domain 55 93 IPR013210 -
Tpr3g0460 400 PANTHER LRR/EXTENSIN 2 394 - -
Tpr3g0460 400 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 2 394 - -
Tpr3g0460 400 PRINTS Leucine-rich repeat signature 148 161 - -
Tpr3g0460 400 PRINTS Leucine-rich repeat signature 288 301 - -
Tpr3g0460 400 SUPERFAMILY L domain-like 56 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0460 Tpr-Chr3 4714036 4715784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0460 54 361 Leucine-rich Repeat extension Gene Families AT3G24480 52.885 8.62e-107 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0460 - - gmx:100820611 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0460 3 4714036 4715784 Tpr3g0460 3 4714036 4715784 ECH