Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0453 ATGCATTCTTCCAAACCACATTCCTCAATCTTCACTCACATTTTTCTTTTATTTGTTACATTCTTATTCTCTCTAAGAATAATAATGTCAAATATGAATTTCATTTTCTATGTCTTAGTAGTACTAGTTCTAGTTCTACAAAATCCTACTATAACACAATGTCATACCAAAGGAATTAGACCAAGGCCTTCTAATGGAAATCCAATTATATCTACCAATATGACCAAAGTACAAGAATCAGAACAACAATTCATGAAATGGGTCAAATTTGTTGGTGGTCTCAAACACACTGTCTTTAGAACTGCCAAAAATAAGCTTTTTCCTTCTTATAGTTTGAATGTTTATAATAAAAAATCTGGTAAAGGAGGATTTTCTTCAATTCAAGCTGCCATTGATTCTCTTCCTTTCATCAATCTAGTTAGAGTTGTCATTAAGGTTCATGCAGGTGTTTATACAGAGAAAGTTAGCATTCCAGCATTTAAATCATTCATAACAATAGAAGGAGCAGGTGCAGATAAAACAATTGTTCAATGGGGTGACACTGCTCAAACACCTAATCCTAGTGCAAAAGGACAGACACTAGGAACCTATGGTTCAGCAACTTTTGCAGTTAATTCACCTTATTTCATTGCTAAGAACATCACATTTAAAAACACTGCTCCAATTCCAGCACCAGGAGCAGTTGGAAAACAAGGAGTGGCATTGAGAATTTCAGCAGATAATGCAATTTTTCTTGGTTGCAAATTCTTAGGAGCACAAGACACATTGTATGATCATATTGGTAGGCACTATTACAAAGATTGTTATATTGAAGGCTCTGTTGATTTCATATTTGGCAATGCTCTTTCTCTTTTTGAGGGTTGTCACGTGCATGCAATAGCACAAAATACAGGAGCACTAACAGCACAAGGAAGGAGCAGTTTATTAGAAGACACGGGATTCTCGTTTGTACACTGTAAGGTCACGGGATCAGGAGCACTATACCTTGGAAGGGCTTGGGGTCCCTTCTCTAGAGTTGTCTTTGCTTACACTTACATGGACAATATCATCATTCCCAAAGGATGGTATAATTGGGGTGATCCCAACCGTGAAATGACTGTATTCTATGGACAATACAAATGTACTGGAGCAGGAGCAAGCTATGCAGGGAGGGTATCATGGTCAAGGGAACTCACTGATGAGGAAGCTAAACCATTTATTTCACTTAGCTATATTGATGGATCTGAATGGATTAATTCTTTCTTATGA 1248 0.3686 MHSSKPHSSIFTHIFLLFVTFLFSLRIIMSNMNFIFYVLVVLVLVLQNPTITQCHTKGIRPRPSNGNPIISTNMTKVQESEQQFMKWVKFVGGLKHTVFRTAKNKLFPSYSLNVYNKKSGKGGFSSIQAAIDSLPFINLVRVVIKVHAGVYTEKVSIPAFKSFITIEGAGADKTIVQWGDTAQTPNPSAKGQTLGTYGSATFAVNSPYFIAKNITFKNTAPIPAPGAVGKQGVALRISADNAIFLGCKFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNTGALTAQGRSSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGAGASYAGRVSWSRELTDEEAKPFISLSYIDGSEWINSFL* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0453 415 ProSitePatterns Pectinesterase signature 2. 270 279 IPR033131 -
Tpr3g0453 415 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 29 414 - -
Tpr3g0453 415 Gene3D - 109 414 IPR012334 -
Tpr3g0453 415 Pfam Pectinesterase 117 407 IPR000070 GO:0030599|GO:0042545
Tpr3g0453 415 SUPERFAMILY Pectin lyase-like 115 413 IPR011050 -
Tpr3g0453 415 PANTHER PECTINESTERASE 29 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0453 Tpr-Chr3 4678874 4682450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0453 28 411 Carbohydrate Esterase AT5G47500 42.857 3.49e-100 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0453 K01051 - gmx:100802832 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0453 3 4678874 4682450 Tpr3g0453 3 4678874 4682450 ECH