Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0449 ATGGTTGATGCTTATAGCAATTTAAGTGATGTTCGTGTTGGAAATTTTCCATGGTGTTTGAAGGTTCGTGTGATTCGTCTTTGGGTGGTCAAATCCAATTTAATTTCTGGGCAAGAAAATTCAATTGAACTTGTGCTTCTTGATGAAAAGGGATGCAAGATACATGCTACTGTCCGGAGACACTTGATTCCTTTGTTTAAAGCTGTTATTATTGAAGGTGAAGTTTATACTTTATCTGCGTTTTCTGTTGTTGATGCTTATGGATTATGCAGGCCAACTAGGCATCCTTGTCGGTTGTTTTTTCATTCTACTACTATTTTGGAGAAAATGGTGTGTCGAGCAATCAAAATGAATGGATTGTCGTTGGTGGACATTGGCCAAATTAATTCTCATTCATGTGATAGTAATTATTTAGTTGATTTTATGGGGGTAATGACTGGTATATCTTCCCAGAATGAGTTTCTTAAAGATGGTCAACGTGTCAAAATGATTGTTGTTGAGATATCTGATCACAGAGGTTTCTGTCATGTTGTTCTGTTTGGCGAAATTGTTGATTACTTGGTTCAGATGATGACCACTCTCGACGGAGGTCTACCGGTGGTTGTTATTCAATTTGCCAAGATCAGATTTTTTCGTGGTCGTGTTCTTTTACAGAATATTCAAAATCTAACTAGGATGTTGTTTAATCCTCCAGTTGATGAATCTGTACTTTTAGGAAGAAGGTTATCTAAAATGCGAGGTGGACCTGCAATGACTGTTCCGTTAATTGGTCCTCCCGTTAAACCTTCGGTCGTGGATGATTTTCTTCGTCTATATCCAAAGAAAACTATTGCTGAGTTGAAATCTACTCCTGATGATGGGCCATTTATTGTATCTGGTGTTGTGGATGGTTTGGTAATTGGAGAAGATTGGTGGTACCCTTCGTGTCGTTGTTCAAAACGTTTAATAATTAATACTGGATTTTATTACTGTAGAGGTTGTTCAAAGCATGTGTTTGAATTTGTCCCTAGGTTTCGCGTCAAAATACATGTTACCGATGGCATTGATGATGCCATGTTTGTTCTTTCTGATGATGATGTCCGTTACCTGACCCGTACCAAGTGTAGCATTCAGCTTTCATCATCCAAGCAGGTTTTGGAAGGAATTAATCCACCTAGTGCTTTGATGAAAATTGAAGGTTTAAAATTGTTGTTTAAGATTGTCATGGTGTCTTCTTTGAATCCTATATACATAGGTGCTTTCAAAGTTTCTAGGGTTTGTCTTGATCCAGATATTTTCAATGCTTTTTCTCTTAAGGGAACACGCCATACTCCTGCAAAGGTTTATAGGCCAGTTATGAGCGAGGTTGTCTATCCCTCGGGTTTGAATGAAGAGATCAATCAACATGGGGAATATTTATCAAAGAAAAGATTGGCTGGTTCATTTGATAATACACTTGGGGAGGAAATTGCAGATCATCACAAGCGATCTAGAGATTGTTGA 1482 0.3792 MVDAYSNLSDVRVGNFPWCLKVRVIRLWVVKSNLISGQENSIELVLLDEKGCKIHATVRRHLIPLFKAVIIEGEVYTLSAFSVVDAYGLCRPTRHPCRLFFHSTTILEKMVCRAIKMNGLSLVDIGQINSHSCDSNYLVDFMGVMTGISSQNEFLKDGQRVKMIVVEISDHRGFCHVVLFGEIVDYLVQMMTTLDGGLPVVVIQFAKIRFFRGRVLLQNIQNLTRMLFNPPVDESVLLGRRLSKMRGGPAMTVPLIGPPVKPSVVDDFLRLYPKKTIAELKSTPDDGPFIVSGVVDGLVIGEDWWYPSCRCSKRLIINTGFYYCRGCSKHVFEFVPRFRVKIHVTDGIDDAMFVLSDDDVRYLTRTKCSIQLSSSKQVLEGINPPSALMKIEGLKLLFKIVMVSSLNPIYIGAFKVSRVCLDPDIFNAFSLKGTRHTPAKVYRPVMSEVVYPSGLNEEINQHGEYLSKKRLAGSFDNTLGEEIADHHKRSRDC* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0449 493 Pfam Domain of unknown function DUF223 43 114 IPR003871 -
Tpr3g0449 493 SUPERFAMILY Nucleic acid-binding proteins 272 380 IPR012340 -
Tpr3g0449 493 CDD RPA1_DBD_A_like 19 106 - -
Tpr3g0449 493 Gene3D - 6 111 IPR012340 -
Tpr3g0449 493 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 19 371 - -
Tpr3g0449 493 Gene3D - 114 247 IPR012340 -
Tpr3g0449 493 PANTHER REPLICATION FACTOR A 1, RFA1 19 371 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr3g0449 493 Gene3D - 270 412 IPR012340 -
Tpr3g0449 493 SUPERFAMILY Nucleic acid-binding proteins 7 109 IPR012340 -
Tpr3g0449 493 SUPERFAMILY Nucleic acid-binding proteins 120 238 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0449 Tpr-Chr3 4631058 4645880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0449 18 346 Core DNA Replication Machinery Family AT2G06510 22.286 4.92e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0449 - - mtr:MTR_8g062030 360.533