Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0442 ATGGCAGAACTTCCCTGTGATCCAGATGGTATTTGCATGGTTTGCAAGCAGAAACCTCTGGAAACTGAAACCCTTGTTTGTAGAACATGCGTTACTCCATGGCATGTTCCATGTCTCCCTATTGTTCCAACTACAATTCTTGATTGGGAATGTTCCGATTGTTCCCAACCACTTGACAATATCAATCATGTTTCCGATTTACCTGCTCCGCCTATCGCCGGAGATCTCGTTTCCTCCATTCGCGCCATCGAGAATGATACTTCGCTTACCGATGAACAAAAAGCGAAGAAACGGCAACAACTCGTTGGTGGATCTTCTAAATCAACCGCTGAAACTACCAACAGACGCAGTAATAATAATAATAATGATTTGCATGATCTCTTCGATGATACCGTTAACTGTTCCTTTTGCATGCAATTGCCTCAGAGACCCGTCACCACACCTTGTGGCCACAATTTTTGTCTAAAGTGTTTTGAAAAATGGATTAAGCAAGGAAAACGAACTTGCGCGAAATGTAGGGCTGCAATTCCAGCCAAGATGGCAAGTAATCCACGAATTAACTCACAGTTGGCGACCGGGATTCGAATGGCAAAGCTAGCAAGATCGGAGGGTGTTGATGGAAGTAGTGCTCCGAAAGTTTATCACACTGTTGACAATGATTTGCGTCCTGACACTGCTTTCACCACCGAGAGAGCAAAGAAAACTGGAAAGGCTAATGCCTGTAGCGGGAAAATCTTTGTGACGATTCCAACAGATCATTTTGGACCGATTTCTGCTGAGAATGATCCAACAAGGAACCGTGGGGTTCTTGTTGGTGATACATGGGAGGATAGGATGGAATGTAGGCAATGGGGTGCTCATTTTCCCCATGTTGCCGGGATTGCTGGTCAGAGTACCTATGGTGCTCAGTCTGTTGCCCTTTCTGGAGGTTATGTTGATGATGAGGATCACGGCGAGTGGTTCCTTTACACCGGAAGTGGTGGAAGGGATCTTAGCGGCAACAAGAGGACCAACAAAAATCAGTCATTTGACCAACAGTTTGAGAACACGAATGAGGCTTTGAGACTCAGTTGTCGAAAAGGTTATCCCGTTCGTGTTGTTAGGTCCCACAAGGAGAAACGTTCCTCTTATGCACCCGAAGCAGGAGTTAGATACGATGGGGTTTATAGAATTGAAAAATGCTGGCGCAAAATTGGAATACAAGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGGCAGCTCCATGGACAAGTGATTTATCCGGAGACCGTCCCCGGCCACTGCCTATAATTGAGGAGTTTAAGAATGCAATTGATGTTACTGAAAGAAAGGGCGATCCATCATGGGATTTTGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCACTAAGTAAGAAGCCGGTTAACATCGTGGATCCTAAAGATGGAAGTAAAATAAAAGTTGTTAGGCCTAAGGAAAAAAAGGTGTCCTTAAAAATCAAGGATAGGCTATTGAAAGAGTTTGGTTGCAATATATGTCACAAGGTGCTGGCTTCCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGCTTGGAGGGTGCCTTTGCTGGCAAAAGTTATATCAGGAATAGAGCAACCTCAAACGGACGCTCTTTGCGGACAAAGAAGAACATTATGAAATGCCCTACTTGTTCAACTGACATAGCAGATTATCTTCAGAATCCCCAGGTTAACAGGGAAATGATGGGTGTCATAGAATCACTCGCTGAACAGATGGAGGAGAGTTCTGAAGAATCAAGTGCTAAAAGTTTAGAATCAGGTGATAAAAGCGATGAAAATCTCAGGTCGGACGAGGAGACAGAGGTTCCAAAGCCCTGTGATTCAACTGAAATAGTCTTGGAGGAAATTAATGAGAGTGATCTGAATCCTCTTCCACAGAAGCGGAGGAAAGGTGCTGATGGTAAGGCTGTGGTGAACGCGGATGAACATATTGATGGGGCAGAAGTTGAAATCAAAGCAATGACTTTCAACTAG 2043 0.4454 MAELPCDPDGICMVCKQKPLETETLVCRTCVTPWHVPCLPIVPTTILDWECSDCSQPLDNINHVSDLPAPPIAGDLVSSIRAIENDTSLTDEQKAKKRQQLVGGSSKSTAETTNRRSNNNNNDLHDLFDDTVNCSFCMQLPQRPVTTPCGHNFCLKCFEKWIKQGKRTCAKCRAAIPAKMASNPRINSQLATGIRMAKLARSEGVDGSSAPKVYHTVDNDLRPDTAFTTERAKKTGKANACSGKIFVTIPTDHFGPISAENDPTRNRGVLVGDTWEDRMECRQWGAHFPHVAGIAGQSTYGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQQFENTNEALRLSCRKGYPVRVVRSHKEKRSSYAPEAGVRYDGVYRIEKCWRKIGIQGHKVCRYLFVRCDNEAAPWTSDLSGDRPRPLPIIEEFKNAIDVTERKGDPSWDFDEEKGCWLWKKPPPLSKKPVNIVDPKDGSKIKVVRPKEKKVSLKIKDRLLKEFGCNICHKVLASPLTTPCAHNFCKACLEGAFAGKSYIRNRATSNGRSLRTKKNIMKCPTCSTDIADYLQNPQVNREMMGVIESLAEQMEESSEESSAKSLESGDKSDENLRSDEETEVPKPCDSTEIVLEEINESDLNPLPQKRRKGADGKAVVNADEHIDGAEVEIKAMTFN* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0442 680 MobiDBLite consensus disorder prediction 592 658 - -
Tpr3g0442 680 MobiDBLite consensus disorder prediction 644 658 - -
Tpr3g0442 680 MobiDBLite consensus disorder prediction 99 122 - -
Tpr3g0442 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 66 IPR013083 -
Tpr3g0442 680 Pfam RING-type zinc-finger 510 565 IPR027370 -
Tpr3g0442 680 SMART ring_2 510 567 IPR001841 -
Tpr3g0442 680 SMART ring_2 134 172 IPR001841 -
Tpr3g0442 680 MobiDBLite consensus disorder prediction 598 628 - -
Tpr3g0442 680 CDD RING-HC 134 172 - -
Tpr3g0442 680 MobiDBLite consensus disorder prediction 88 122 - -
Tpr3g0442 680 SMART G9a_1 259 416 IPR003105 -
Tpr3g0442 680 SUPERFAMILY PUA domain-like 238 433 IPR015947 -
Tpr3g0442 680 Pfam Zinc finger, C3HC4 type (RING finger) 134 172 IPR018957 GO:0046872
Tpr3g0442 680 Gene3D - 235 430 IPR036987 -
Tpr3g0442 680 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 2 656 - -
Tpr3g0442 680 ProSitePatterns Zinc finger PHD-type signature. 12 54 IPR019786 -
Tpr3g0442 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 199 IPR013083 -
Tpr3g0442 680 SUPERFAMILY RING/U-box 126 180 - -
Tpr3g0442 680 SUPERFAMILY RING/U-box 502 591 - -
Tpr3g0442 680 ProSiteProfiles YDG domain profile. 264 412 IPR003105 -
Tpr3g0442 680 ProSitePatterns Zinc finger RING-type signature. 525 534 IPR017907 -
Tpr3g0442 680 SUPERFAMILY FYVE/PHD zinc finger 5 57 IPR011011 -
Tpr3g0442 680 ProSiteProfiles Zinc finger RING-type profile. 134 173 IPR001841 -
Tpr3g0442 680 Coils Coil 581 601 - -
Tpr3g0442 680 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 656 IPR045134 -
Tpr3g0442 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 497 618 IPR013083 -
Tpr3g0442 680 ProSiteProfiles Zinc finger RING-type profile. 510 568 IPR001841 -
Tpr3g0442 680 SMART PHD_3 11 55 IPR001965 -
Tpr3g0442 680 Pfam SAD/SRA domain 267 415 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0442 Tpr-Chr3 4584263 4588261 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0442 3 598 C2H2 Transcription Factor Family AT5G39550 59.571 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0442 K10638 - gmx:100786796 931.398