Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0441 ATGGCACAGCTTCTTCCTTGCGACTCCGAAGGTGTTTGCATGGTTTGCAAACAGAAACCTCTGGAAACTGAAACTCTTGTTTGCAGAACATGCATAACTCCATGGCATGTTCCATGTCTCCCTATTGTTCCAACTACAATTCTTGATTGGGAATGTTCCGATTGTTCACAACCTGTTGACATCAACCATGTTGCCGATGTACCTACTCCGCCTATCGCCGGAGATCTTGTTTCCGCCATTCGCGCAATCGAGAATGATACTTCGCTTACTGATGAAGAAAAAGCGAAGAAACGTCAAGAACTGGTTGGCGGATCTAGTAAAACAGCTGCTGAACCGAACTCCAGAAGCTGTAATAATGGTTTGCCTGATCTCTTTGATGGTAGCGTTAACTGTTCCTTTTGCATGCAGTTGCCTGACAGACCCGTCACTACACCATGTCAGCACAATTTTTGTCTCAAGTGTTTTGAAAAATGGATTAAGCAAGGAAAACGAACTTGTGCGAATTGTAGGGCTGCAATTCCAGCCAAGATGGCGAGTAATCCACGAATTAACTCACAGATGGCAGCTGGGATTCGTATGGCAAAGCTCGAAAGATTGCAAGGTGCTGGGGGAAGCAGTGTTCCAAAAGTTTATCACACTGTTGACAATGATGAGCGTCCTGACACTGCTTTCACCACTGAGAGAGCAAAGAAAACTGGAAAGGCTAATGCATGTAGCGGGAAAATCTTTGTGACGATTCCAAAAGATCATTTTGGACCAATTTCTGCTGAGAATGATCCAACAAGGAATCGTGGGGTTCTTGTTGGTGATACATGGGAGGATAGGATGGAATGTAGGCAATGGGGTGCTCATTTCCCCCATGTTGCCGGGATTGCTGGTCAGAGTACTCACGGTGCTCAGTCTGTTGCTCTTTCTGGAGGTTATGTTGACGATGAGGATCATGGTGAGTGGTTCCTTTACACAGGAAGTGGTGGAAGGGATCTTAGTGGAAACAAGAGGACCAACAAAAATCAGTCATTTGACCAGCAGTTTGAGAACATGAATGAGGCTTTGAGGCTCAGTTGTCGAAAAGGTTATCCTGTTCGTGTTGTTAGGTCCCACAAGGAGAAACGTTCCTCGTATGCACCGGAGGAAGGTGTGAGATACGACGGAGTTTATAGAATTGAGAAATGTTGGCGCAAAATTGGAATACAAGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGGCAGCTCCATGGGCAAGTGATTTTTCCGGAGACCGTCCCAGGCCACTACCTATAATTGAGGAGCTTAAGGATGCAGTTGATGTTACTGAAAGAAAGGGTGATCCATCATGGGATTTTGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCACTAAGTAAGAAGCCGGTTAACACTGTGGATCCTATAGATGGAAGTAAAATAAAAGTTGTTAAGCCAAAGGCAAAAAAGGCGTCCTTCAAAATCAAGGATAGGCTATTGAAAGAGTTTGGTTGCAATATATGTCGCAAGGTGTTGGCTTCCCCTATTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGCTTGGAGGGTTCCTTTTCTGGCCAAAGTTATATCAGGAATAGAACAACCCAAAGCGGACGCTCTTTGCGGACACAGAAGAACATTATGAAATGCCCTACTTGCTCAACTGACATAGCTGATTATCTTCAGAATCCCCAGGTTAACAGGGAAATGATGGGAATGATAGAATCACTCCAACGAAAGGCTGAACAGATGGAGGAGAGTTCTGAAGAATCAAGTGCTAGAAGTGAAGAACCAAGTGATAAAAGTGATGAAAATCGCAAGTCGGGTGAGGAGACAGAGGTTCCGAAGCCCTGTGATTCAAGTGAAAAAGTCTCAGAAGAAACTGAGGAGAATGATGTCGATCCTCTAGAGAAGCGGAGGAAAGGTGCTGATGGCAAGGCTGTGGTGAACGCGGAGGAGCATACCGATGAGGCGGTAGTAGAAAACAAGTAA 2025 0.4519 MAQLLPCDSEGVCMVCKQKPLETETLVCRTCITPWHVPCLPIVPTTILDWECSDCSQPVDINHVADVPTPPIAGDLVSAIRAIENDTSLTDEEKAKKRQELVGGSSKTAAEPNSRSCNNGLPDLFDGSVNCSFCMQLPDRPVTTPCQHNFCLKCFEKWIKQGKRTCANCRAAIPAKMASNPRINSQMAAGIRMAKLERLQGAGGSSVPKVYHTVDNDERPDTAFTTERAKKTGKANACSGKIFVTIPKDHFGPISAENDPTRNRGVLVGDTWEDRMECRQWGAHFPHVAGIAGQSTHGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQQFENMNEALRLSCRKGYPVRVVRSHKEKRSSYAPEEGVRYDGVYRIEKCWRKIGIQGHKVCRYLFVRCDNEAAPWASDFSGDRPRPLPIIEELKDAVDVTERKGDPSWDFDEEKGCWLWKKPPPLSKKPVNTVDPIDGSKIKVVKPKAKKASFKIKDRLLKEFGCNICRKVLASPITTPCAHNFCKACLEGSFSGQSYIRNRTTQSGRSLRTQKNIMKCPTCSTDIADYLQNPQVNREMMGMIESLQRKAEQMEESSEESSARSEEPSDKSDENRKSGEETEVPKPCDSSEKVSEETEENDVDPLEKRRKGADGKAVVNAEEHTDEAVVENK* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0441 674 Pfam RING-type zinc-finger 507 544 IPR027370 -
Tpr3g0441 674 SUPERFAMILY RING/U-box 123 177 - -
Tpr3g0441 674 Gene3D - 232 427 IPR036987 -
Tpr3g0441 674 MobiDBLite consensus disorder prediction 590 635 - -
Tpr3g0441 674 MobiDBLite consensus disorder prediction 643 674 - -
Tpr3g0441 674 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 5 658 IPR045134 -
Tpr3g0441 674 MobiDBLite consensus disorder prediction 90 115 - -
Tpr3g0441 674 Pfam Zinc finger, C3HC4 type (RING finger) 131 169 IPR018957 GO:0046872
Tpr3g0441 674 CDD RING-HC 131 169 - -
Tpr3g0441 674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 64 IPR013083 -
Tpr3g0441 674 MobiDBLite consensus disorder prediction 589 674 - -
Tpr3g0441 674 ProSitePatterns Zinc finger RING-type signature. 522 531 IPR017907 -
Tpr3g0441 674 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 5 658 - -
Tpr3g0441 674 ProSiteProfiles Zinc finger RING-type profile. 507 565 IPR001841 -
Tpr3g0441 674 ProSiteProfiles YDG domain profile. 261 409 IPR003105 -
Tpr3g0441 674 Pfam SAD/SRA domain 264 412 IPR003105 -
Tpr3g0441 674 SUPERFAMILY PUA domain-like 235 430 IPR015947 -
Tpr3g0441 674 SMART ring_2 507 564 IPR001841 -
Tpr3g0441 674 SMART ring_2 131 169 IPR001841 -
Tpr3g0441 674 SMART PHD_3 12 56 IPR001965 -
Tpr3g0441 674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 195 IPR013083 -
Tpr3g0441 674 ProSiteProfiles Zinc finger RING-type profile. 131 170 IPR001841 -
Tpr3g0441 674 SUPERFAMILY FYVE/PHD zinc finger 7 58 IPR011011 -
Tpr3g0441 674 SMART G9a_1 256 413 IPR003105 -
Tpr3g0441 674 ProSitePatterns Zinc finger PHD-type signature. 13 55 IPR019786 -
Tpr3g0441 674 SUPERFAMILY RING/U-box 499 590 - -
Tpr3g0441 674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 618 IPR013083 -
Tpr3g0441 674 Coils Coil 578 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0441 Tpr-Chr3 4577162 4581132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0441 5 625 C2H2 Transcription Factor Family AT5G39550 57.845 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0441 K10638 - gmx:100786796 937.947