Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0426 ATGGGTGAGTGTGAGATACCTCAACTTATTATTAGTAGCTCTAGCTCAGAGACTAAAACTTCTTCATCTTCGGAGCTCCATTTACCCGACCCGGTTCAAAAGAGATCCAAAAGACCAAGAGAAAGTAACCACCCGGTTTACAGAGGAGTTCGAATGCGGGCATGGGGAAAATGGGTATCCGAAATCCGCGAGCCACGTAAGAAGAATCGGATCTGGCTAGGAACCTTCGCAACGCCGGAGATGGCGGCTCGAGCTCATGACGTGGCAGCTTTAGCCATCAAAGGTAGTTCAGCCATCCTCAACTTCCCTGAACTCGCTGATTCAATGCCCCGACCCGATTCAAATTCTCCTCGTGATGTTCAAGCCGCTGCTGTCAAAGCCGCTGCAATGGAAGTTCCCGATCATCAACAACAACAAACATCATCATCATCTTCGCTGTCGCAATCTTCATCATCTTGTTCATTGGCGATTTCATCTTCCTCCGGTGAACCGTCAACACCAGATGATCTAGGTGAAATAGTGGAATTACCAGCATTGGGAACGAGTTTCGAATTACCCGACCCGAATAATATGATATTTTCCGACCCGGTTGATGGTTCATGGACTTGGTTTAATAATCACAGCATTTACGATGAAAGGGATTATTTTAAGGACTTGGATCAGATTTCAATGCAACAAGATACTAATTCTGAAAGTTTTACTAGTATGATTCTTTGTGGTTATTATGAGGGTTCTTTGTGGCAGCAGCATTAG 753 0.4502 MGECEIPQLIISSSSSETKTSSSSELHLPDPVQKRSKRPRESNHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALAIKGSSAILNFPELADSMPRPDSNSPRDVQAAAVKAAAMEVPDHQQQQTSSSSSLSQSSSSCSLAISSSSGEPSTPDDLGEIVELPALGTSFELPDPNNMIFSDPVDGSWTWFNNHSIYDERDYFKDLDQISMQQDTNSESFTSMILCGYYEGSLWQQH* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0426 250 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Tpr3g0426 250 MobiDBLite consensus disorder prediction 30 45 - -
Tpr3g0426 250 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 13 233 - -
Tpr3g0426 250 MobiDBLite consensus disorder prediction 8 29 - -
Tpr3g0426 250 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Tpr3g0426 250 MobiDBLite consensus disorder prediction 108 171 - -
Tpr3g0426 250 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Tpr3g0426 250 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Tpr3g0426 250 MobiDBLite consensus disorder prediction 1 45 - -
Tpr3g0426 250 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Tpr3g0426 250 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Tpr3g0426 250 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Tpr3g0426 250 MobiDBLite consensus disorder prediction 133 166 - -
Tpr3g0426 250 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Tpr3g0426 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0426 Tpr-Chr3 4487813 4489274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0426 6 198 AP2-EREBP Transcription Factor Family AT5G11590 55.330 2.98e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr3g0426 AP2 5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0426 K09286 - gmx:100778201 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0426 3 4487813 4489274 Tpr3g0426 3 4487813 4489274 ECH
Tpr3g0426 3 4487813 4489274 Tpr5g0111 5 1656640 1657493 PCT