Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0424 ATGGGTTGTGTGTTTGGTAAAGAGTCATCAGTGGAAGAGAGGAGAGAGGAAGTTAGAGAAGCAAAAGTAGATGTGGGTGTGGGTGGTGGTAGTGGTAGAGAGGTTGAGAATGTGAAAGAGGGTGGAGAGGAGAAGAGAATAAGGCATAGTAGGGAGAGAAGAAGACGATCTTCGAAGCAGAATCCGAGGTTGAGTAATCCATCTAACAATGTTCATGGTGAACAGGTTGCAGCTGGTTGGCCTTCTTGGTTATCTAAGGTTGCTGGTGAAGCTATCAATGGATTGGTTCCTAGGAGGGCTGATACTTTTGAGAAACTTGATAAGATTGGGCAAGGTACATACAGCAATGTTTACAAAGCTAGGGATACATTAGCAGGGAAGATTGTTGCCCTAAAGAAGGTCCGTTTCGACAATTTAGAGCCCGAGAGTGTGAAGTTTATGGCAAGAGAGATTCTGATTCTTCGTCGTTTGGATCATTCCAATGTTGTCAAATTGGAAGGCTTAGTGACTTCAAGAATGTCATGCAGTTTATATCTTGTGTTTGAATACATGGCACATGATCTGGCTGGACTTGCTACCAATCCAGCGATTAAGTTCACAGAACCTCAGGTAAAATGTTACATGCATCAGCTATTTTCTGGGCTGGAACATTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGTTCAAACCTTCTTATCGACAATGATGGAATTCTCAAGATTGCTGATTTTGGACTAGCTTCCTTCTTTGATCCTGATCACAAGCACCCGATGACAAGTAGAGTGGTGACATTATGGTATCGACCTCCAGAACTTCTTCTTGGAGCCACTGAATATAGTGTAGGCGTGGACCTATGGAGTGCTGGCTGCATTCTTGCTGAACTATTGGCTGGAAAACCTATCATGCCTGGTCGAACAGAGGTTGAGCAGCTACATAAGATATTTAAGCTATGTGGTTCTCCATCCGAAGAATATTGGAAAAAGTCAAAGTTGCCACATGCTACCATTTTTAAGCCTCAACAATCATACAAGCGATGCATAGCGGAGACTTTTAAGAATTTTCCACCATCATCCTTGCCACTGATTGAAACCCTTCTCACAATTGATCCTGATGAACGTCTGACTGCCACCGCTGCGTTGCATAGTGAATTTTTTACTACAAAACCTTATGCTTGTGATCCCTCTAGCCTTCCTAAATATCCTCCCAGTAAAGAGATGGATGCAAAGCTACGGGACGAAGAAGCTAGAAGATTGAGAGCAGCTGGTAGAGCAAATGCTGATGGTGTGAAGAAATCTCGTCCACGTGAGCGAGTAGGGAGGGGACTTCCCATTCCAGACGCCAATGCTGAACTGCAAGCAAATATTGATAGACGGCGATTGATCACACACGCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCACACCAAGATGGAGCTCTAGGCTATCCTTTGGGTTCTTCACAACACATGGATCCAATTTTCGATCCTCCCGACATTCCATTTAGTTCAACAAACTTGTCACAACGAAAATCAAATATCCATACTTGGTCTGGTCCATTGGTCGATCCCGGAGGCGTTGGTGCACCGAGGAGAAAGAAGAAACATGGAAGGTGA 1626 0.4416 MGCVFGKESSVEERREEVREAKVDVGVGGGSGREVENVKEGGEEKRIRHSRERRRRSSKQNPRLSNPSNNVHGEQVAAGWPSWLSKVAGEAINGLVPRRADTFEKLDKIGQGTYSNVYKARDTLAGKIVALKKVRFDNLEPESVKFMAREILILRRLDHSNVVKLEGLVTSRMSCSLYLVFEYMAHDLAGLATNPAIKFTEPQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIADFGLASFFDPDHKHPMTSRVVTLWYRPPELLLGATEYSVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCIAETFKNFPPSSLPLIETLLTIDPDERLTATAALHSEFFTTKPYACDPSSLPKYPPSKEMDAKLRDEEARRLRAAGRANADGVKKSRPRERVGRGLPIPDANAELQANIDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSQHMDPIFDPPDIPFSSTNLSQRKSNIHTWSGPLVDPGGVGAPRRKKKHGR* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0424 541 MobiDBLite consensus disorder prediction 1 72 - -
Tpr3g0424 541 ProSiteProfiles Protein kinase domain profile. 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g0424 541 SMART serkin_6 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g0424 541 Gene3D Transferase(Phosphotransferase) domain 1 186 426 - -
Tpr3g0424 541 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Tpr3g0424 541 Gene3D Phosphorylase Kinase; domain 1 91 185 - -
Tpr3g0424 541 PANTHER CYCLIN-DEPENDENT KINASE 2 540 - -
Tpr3g0424 541 SUPERFAMILY Protein kinase-like (PK-like) 98 393 IPR011009 -
Tpr3g0424 541 Pfam Protein kinase domain 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g0424 541 MobiDBLite consensus disorder prediction 504 519 - -
Tpr3g0424 541 MobiDBLite consensus disorder prediction 490 541 - -
Tpr3g0424 541 CDD STKc_CDK9_like 103 387 - -
Tpr3g0424 541 MobiDBLite consensus disorder prediction 8 23 - -
Tpr3g0424 541 PANTHER CELL DIVISION PROTEIN KINASE 2 540 - -
Tpr3g0424 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0424 Tpr-Chr3 4457057 4463257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0424 98 425 Core Cell Cycle Gene Families AT5G10270 51.453 1.54e-117 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tpr3g0424 Pkinase 2.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0424 K08819 - gmx:100779413 952.97