Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0418 ATGGAACGCATCGTTGGCGGCAACTACAAGCTCGGCCGCAAGATCGGAAGTGGATCCTTCGGTGAAATCTATCTCGCTACGCATATTGATACCTTTGAAATCGTCGCCATCAAAATCGAGAACACTAAAACAAAGCATCCACAACTAATTTATGAGGCGAAGCTCTACAAAATTCTTCAAGGAGGAAGTGGCATTCCAAGCATAAAATGGTTTGGAGTAGACGGTGAGGATAACGTGCTTGCTATTGATTTATTGGGGCCTAGTCTTGAGGATCTTTTTGTGTATTGTGGGAGGAAGTTCTCGTTGAAGACTGTGTTAATGTTAGCTGATCAAATGATTACTAGAATAGAATATGTGCATTCGAAAGGATATTTACATAGGGATATTAAACCCGATAACTTCCTCATGGGACTTGGTCGGAAGGCTAACCAGGTTTACATAATTGATTTTGGGCTAGCAAAACGGTATAGGGACTCTGCAACCCATCGCCACATTCCTTACAGGGAGAACAAAAGCTTAACAGGGACTGCTCGATATGCAAGTTGCAATACTCATCTTGGGATTGAGCTAAGTAGGCGGGATGATTTGGAATCGCTAGGATATGTACTTCTCTACTTCCTTAGGGGAAGCCTTCCTTGGCAAGGCCTAAAGGCTGCAACAAAGAAACAGAAGTATGATAAAATATGTCAGAAGAAGGTATCAACTCCTATCGAGGTACTATGCAAATCTCATCCCGTAGAGTTTGCTTCATACTTCCATTACTGCCACTCATTGACGTTTGATCAGCGGCCTGATTATGGATTCTTGAAACGCCTATTTAGAGACCTATTTGCTCGGGAAGGTTATGCATTTGATTTCGTTTTTGATTGGACCATTTTAAAGTACCAGCAATCACAGAAGCATGTAGTGCAGCCTTCCTTACCTCCTGTTCCTGGTGCAATTAACCGTCATGCAGTCCCGATGGATGTTGACAACCGTCAAGGGCTTGGTGAAGAGCGAATTAGATCCGGAAATGCTACTGGTTCTGGTGGTAAAGTTCAGTTTAAATCACCAGCTGGTAGAAACTTGAGTTCTGAAAATCCTCTTAACAAGAATATTTTGGGTGAAGCAAATATGGCCTCTACTTCGTATTCCCCGGCTGGTACTTCAAAAAGGAACCCCTTGAACCCTGCCTTGTCTGCTGAACCTTCCGACCGTGGACATGAGCAAGGCAGTAAAGTTGGCCCATCAAGTAGCTGGATGTCATCTCTGCAACGCAATTCTTCTTCCAAATGA 1275 0.4345 MERIVGGNYKLGRKIGSGSFGEIYLATHIDTFEIVAIKIENTKTKHPQLIYEAKLYKILQGGSGIPSIKWFGVDGEDNVLAIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGYLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSATHRHIPYRENKSLTGTARYASCNTHLGIELSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICQKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYAFDFVFDWTILKYQQSQKHVVQPSLPPVPGAINRHAVPMDVDNRQGLGEERIRSGNATGSGGKVQFKSPAGRNLSSENPLNKNILGEANMASTSYSPAGTSKRNPLNPALSAEPSDRGHEQGSKVGPSSSWMSSLQRNSSSK* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0418 424 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g0418 424 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g0418 424 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Tpr3g0418 424 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 404 - -
Tpr3g0418 424 PANTHER CASEIN KINASE-RELATED 1 404 - -
Tpr3g0418 424 MobiDBLite consensus disorder prediction 340 390 - -
Tpr3g0418 424 MobiDBLite consensus disorder prediction 404 424 - -
Tpr3g0418 424 MobiDBLite consensus disorder prediction 334 424 - -
Tpr3g0418 424 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g0418 424 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Tpr3g0418 424 CDD STKc_CK1_delta_epsilon 9 282 - -
Tpr3g0418 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Tpr3g0418 424 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0418 Tpr-Chr3 4416857 4420578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0418 9 213 MAP Kinase Kinase Kinase AT1G54960 28.959 3.91e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Tpr3g0418 Pkinase 7.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0418 K08960 - gmx:100800342 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0418 3 4416857 4420578 Tpr5g0096 5 1494275 1498692 PCT