Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0410 ATGCCTTACGCCAAGTTGTTGTCGAGTGTGAGTGGTGATCAAGCGTCAAAGCTGAGGGAGTTGGAGAGAGAGTATGAAGAGGTTTTGGATGAGAATTGTAGGATTCTTGCTGTGTATTTTAAAGAGGTTTTGGTGAATAAAGACGAAGAATCAACAATTAGTCCACCGTTGTTGATATTGAAGAGTGCCGTAGAAGGTGGCCGTGGCAACGATGGTGGAGAGGACAGAAAGGAGGAAATGCAAATGCCTGTGTTGAAGAACGGACGGTATAATCCAATATGGTCCGAAAGGGATACGTCTATTGAATACTTGAGCAGCAGTTCCAGCAATAGGTCCTCCCAGGCACCATTATATCCTCAAAGAGTCTCTTCTGGAGTCCTCAATCCCCGAAAATCTTCAAATTATTGGACAACACCGGTCTATTTAAACTCAGCCACCGAAACTCAATTTTCTTTGGATAAGAATTCACTTTGTTCTTCTTCGGATTCTGAAGCTGAAAATGAGGAAAAAGACAAAAATATAGCATTGTTGGAGCCTCAACAAAGCCAAACCCAGGAACAAATGCAAGCTATCTTCAAAGAATCCAGGGGCTCCCCAGATTATCCAATGGCAGACTATGAAATCACACCCCCACATGGAAGTGAGAAGCAAACACCTCCTAAAGACTTTGTCTGTCCAATAACCAGTAACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAGACATATGAACGTAAAGCTATTGAGGAATGGTTCAATAGAGGGAACACAGCTTGTCCTATCACTCGTCAGAATCTGCAAAACACCAAGCTACCTAAGACAAATTATGTGCTCAAAAGACTAGTTGCTAGCTGGAAAGAACACAATCCCAGCTCAGCCCCGCCAACATGCGAGAGTCCATACAAAGATAACGAGGAAGACGTAAAGACAACAATGCCTTCGGCTTCTCCTAATAGTGTCATAACACAAGCCACCATTGATGGGATGGTTAGTGAGTTACGTTGTGCAATCAATAACCTGTACATGTCAGAGATTCTCCAGGAATCTGAAATGGCGGTTCTTCAAATTGATAAATTGTGGAGAGGAGGGAATCTGGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAACGGGTTTGTGGAGATACTTTTCAATTCTGTTGAACCCCATGTGCTACAGGCAGCAGTTTTCCTTCTGTCCGAGATGGGCTCTAGAGACAATGCTGTTATTCAGACTCTCACGCGTGTAGACACTGACGTTGAATGTATAATGGCTCTTTTCAAGAAAGGGTTGACAGAGGCTGTTGTGCTATTGTATCTCCTAAACCCTTCCCCTGTGACTCTTACTGAGATGGCCATAGTGGAGTCCCTCATAGAAGTTTTTAGTCAGAAAGAGGAAGACTTGGTTAAGATGTGTTTAAATCCCACAACAGCTGCAGTTCTTCTACTGGCACAGATTATCGGAAGCAGTGATGAGACAATTGCGTCTTCAGTTGTCAAGACTTTGTTCTCTGAAAAAGCCATTGGAGCTATTGCTGGCAGTTTGGGAGCTGAATGGGCAGAAGAAAGGATCGCTGCAGTGGAGATCTTATTGAGATGCATGCAAGAGGATGGGACTTGCAGAAACACCATTGCTGATAAAGCAGAGCTGTCTCCTATTCTGGAAACCTTCATCTGTGCAACTGATGTAGAGCGTTTCAAGATTGTTGAATTTTTTTCTGAATTGATCAAACTAAATAGGAGAACATTCAATGAACGAATCCTCCACATTATAAAGGAAGAAGGACCTTTTAGCACCATGCATACTCTTCTTATTCATTTGCAGACAGCCCTTCAAGATCAATGTCCAGTCATGGCCGGTCTCTTACTCCAACTTGATCTTCTGGTGGAACCAAGAAATATGAGCATATACCGTGAAGAGGCGATAGATACTCTTATTTCATGCCTGAAGAACTCAGATTTCCCTGCTACCCAGTTAGCAGCTGCTAATACGATCATGTCACTGCAAGGGAGGTTCAGCTTCTCTGGAAAGCCTCTTATCAGAGAAGTCCTTCTTAAACGTGCAGGTATTGACAAAGGTCCCAGAAGTGATGTACAGGTGGATCATATGAGCAACTTCTTCTCAGAAATCGAAATAACACCAGAAGAAGAGAAGGCGGCAGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTTAGCCACGAGTTTGGTATAATTTTTGAAGCTTTGGCAGATGGCATGAAGAGCAGAATTCCAGAACTACGTTCAGCGTGCTTTATATCAGCTACGTGGCTCATATACATGCTGACCGTTCTACCAGATACAGGGATACAAGGAGCAGCCCGTGTCTGTTTGCTAAAGCAGTTTGTAAATAAATTAAGCTCAGCGAAGGGCGTAGAACACAAAATCCTTTCTTTGCTTGCTCTCAATAGCTTTCTTCATTTCTCTGACGGTGTACGTGATCTAACTGCTTCCTACGCTAAGGATATCTTAAAAGGTTTGAGAGAGCTAAAGAGATTCTCTCCCTTGGCATCTGAAATGCTGAAAGTTCTAGTTGATGAGAATGACCCTAAAACAGAAATTTGGAGACATAAAGAGCTAATCCAAGAAGATTGCAGAGAGAATGGAGAAGTGTTGTCTGTCATTTGCTTCAAGGATAAAATTATTTCAGGCCATACAGATGGAAGCATCAAGGTCTGGACATTAAAGGATAACTTATTACTTCTGTTGCAAGAGATCCAAGAACATGTTAAGGCTGTGACAACCTTGACAATTTCAGAATCTCGTGACAGACTTTACAGTGGTTCACTTGATCGAACTGCAAAGATCTGGTCTATTGGAAAAGAAGAAATACATTGTGAGCAGGTGAACGATATGAAGGACCAGATTCATAATTTAGTTGTAACCAATAGCACAACTTGTTTCATTCCGCAGGGGACTGGTATCAAGGTTCAGTCATTGAATGGAGAATCCAAGTTGTTAAATTCTAATAAATATGTGAAGTGTTTGGCTCATGCACATGGAAGATTATACTGTGGATGCCACGACAGTAGTGTTCAGGAGATACATTTGGCCACTGGAACTATCAGTAATATTCAAAGTGGTTATAAAAGATTACTTGGGAAAGCATATCCTATTCATGCAATGCAAATTCATGGTGAACTTGTATATGCAGCTGGCTCTTCCTTGGACGGAACTTCGATAAAGATATGGAACAATTCCAATTACAGTATGATTGGATCACTGCAAACTGGATCAGAAGTGCGGGCTATGGCAGTAAGTTCAGAATTAATTTATCTTGGGTGCAAGGGAGGTGCTGTAGAAATTTGGGATAAGAAGAAACTCGTTAGTTGGCACATTACAGTTGGGTACAAACTGTAA 3393 0.4182 MPYAKLLSSVSGDQASKLRELEREYEEVLDENCRILAVYFKEVLVNKDEESTISPPLLILKSAVEGGRGNDGGEDRKEEMQMPVLKNGRYNPIWSERDTSIEYLSSSSSNRSSQAPLYPQRVSSGVLNPRKSSNYWTTPVYLNSATETQFSLDKNSLCSSSDSEAENEEKDKNIALLEPQQSQTQEQMQAIFKESRGSPDYPMADYEITPPHGSEKQTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRGNTACPITRQNLQNTKLPKTNYVLKRLVASWKEHNPSSAPPTCESPYKDNEEDVKTTMPSASPNSVITQATIDGMVSELRCAINNLYMSEILQESEMAVLQIDKLWRGGNLGVDIHSMLSKPPIINGFVEILFNSVEPHVLQAAVFLLSEMGSRDNAVIQTLTRVDTDVECIMALFKKGLTEAVVLLYLLNPSPVTLTEMAIVESLIEVFSQKEEDLVKMCLNPTTAAVLLLAQIIGSSDETIASSVVKTLFSEKAIGAIAGSLGAEWAEERIAAVEILLRCMQEDGTCRNTIADKAELSPILETFICATDVERFKIVEFFSELIKLNRRTFNERILHIIKEEGPFSTMHTLLIHLQTALQDQCPVMAGLLLQLDLLVEPRNMSIYREEAIDTLISCLKNSDFPATQLAAANTIMSLQGRFSFSGKPLIREVLLKRAGIDKGPRSDVQVDHMSNFFSEIEITPEEEKAADDWERKIASVLVSHEFGIIFEALADGMKSRIPELRSACFISATWLIYMLTVLPDTGIQGAARVCLLKQFVNKLSSAKGVEHKILSLLALNSFLHFSDGVRDLTASYAKDILKGLRELKRFSPLASEMLKVLVDENDPKTEIWRHKELIQEDCRENGEVLSVICFKDKIISGHTDGSIKVWTLKDNLLLLLQEIQEHVKAVTTLTISESRDRLYSGSLDRTAKIWSIGKEEIHCEQVNDMKDQIHNLVVTNSTTCFIPQGTGIKVQSLNGESKLLNSNKYVKCLAHAHGRLYCGCHDSSVQEIHLATGTISNIQSGYKRLLGKAYPIHAMQIHGELVYAAGSSLDGTSIKIWNNSNYSMIGSLQTGSEVRAMAVSSELIYLGCKGGAVEIWDKKKLVSWHITVGYKL* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0410 1130 Pfam WD domain, G-beta repeat 915 949 IPR001680 GO:0005515
Tpr3g0410 1130 Pfam U-box domain 220 290 IPR003613 GO:0004842|GO:0016567
Tpr3g0410 1130 MobiDBLite consensus disorder prediction 290 314 - -
Tpr3g0410 1130 SMART WD40_4 910 949 IPR001680 GO:0005515
Tpr3g0410 1130 SMART WD40_4 1079 1115 IPR001680 GO:0005515
Tpr3g0410 1130 SMART WD40_4 984 1027 IPR001680 GO:0005515
Tpr3g0410 1130 SMART WD40_4 868 905 IPR001680 GO:0005515
Tpr3g0410 1130 SMART WD40_4 1030 1076 IPR001680 GO:0005515
Tpr3g0410 1130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 297 IPR013083 -
Tpr3g0410 1130 SUPERFAMILY ARM repeat 377 866 IPR016024 -
Tpr3g0410 1130 Gene3D - 860 1126 IPR015943 GO:0005515
Tpr3g0410 1130 CDD RING-Ubox_PUB 223 265 IPR045210 -
Tpr3g0410 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 917 950 IPR001680 GO:0005515
Tpr3g0410 1130 SUPERFAMILY WD40 repeat-like 879 1117 IPR036322 GO:0005515
Tpr3g0410 1130 SMART Ubox_2 222 286 IPR003613 GO:0004842|GO:0016567
Tpr3g0410 1130 Coils Coil 11 31 - -
Tpr3g0410 1130 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 1120 - -
Tpr3g0410 1130 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 1120 - -
Tpr3g0410 1130 SUPERFAMILY RING/U-box 207 291 - -
Tpr3g0410 1130 Gene3D - 363 673 IPR011989 -
Tpr3g0410 1130 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 917 950 - -
Tpr3g0410 1130 ProSiteProfiles U-box domain profile. 218 293 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0410 Tpr-Chr3 4340591 4346803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0410 220 307 U-box Gene Family AT5G42340 44.318 4.77e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0410 - - gmx:100808867 1727.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0410 3 4340591 4346803 Tpr3g0410 3 4340591 4346803 ECH