Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0408 ATGGCGACGGAGCGTCAATCCAAGAGTTGGAGCATCCATACCCGATCGGAGATCATCGCCAAGTACCAAATCATGGAACGAATCGGCTCCGGAGCTTACGCCGATGTTTACCGTGGCCGTCGTCTCTCCGACGACCTAACAGTTGCTCTCAAAGAAATCCACGACTACCAATCCGCCTTCCGAGAAATCGAAACATTGCAAATGCTTCAAGGTTCTCCAAACGTCGTCGTTTTGCACGAATACTTCTGGCGTGAAGACGAAGACGCTGTTATCGTTCTTGAATATCTCACCACCGACTTGTCTACCGTCATTTCCAATGCCGCCAAGGAAGGTATTCCACTTCCCGTTGGTGAGATAAAGCGCTGGATGATTCAGATTCTTTCCGGTCTTGATTCCTGTCACCGGAATATGATTGTTCATCGTGATTTGAAGCCTTCTAATCTCTTGATTTCTGATTCTGGTATTCTCAAATTGGCTGATTTTGGACAGGCAAGGATACTCACAGAACATGGATTTGATGCTTTTGAGGAAAATCCACCACCATGTGAGAATGATAGTTCTAACAATGAAAGTTCACTTCATGTGAGATGTGAAAATCAAGAGCAGGGAAGCAGTCATGAAGAGTATATTGGTGTTTCAGATGAGCTGAAAACAAAGAGATCTGCGGATGATGTTGATAAGGATACAAATATTCTGGATGGAAATACTTCTTGCCTTGCAACGTGCACAACAAGTGATATGGATAATGATCCTATGAGAACTTCTTTTAGTTATGAAGCAACGGAGGGGGAAGATAGAGAAAGTGGTGGTTTCACGTCATGTGTTGGAACTCGCTGGTTCCGTGCTCCTGAATTGCTTTACGGATCTATTAACTATGGTTTAGAAATTGATCTTTGGTCACTTGGATGTATTTTTGCTGAGCTCTTGACTCTTAAGCCCTTGTTTCCTGGAACGGCTGATATTGACCAGCTCAGTAGAATTATTAATGTTTTGGGCAACCTAGATGAGAGAGCTTGGTCTGATTGTTCAAAACTTCCTGATTACGGAATAATCTCGTTTAGCAAGGTAGAAAACCCTGCTGGTGTTGAAGCCTGCCTGCCCAACCGCTCACCCGATGAAGTATCTCTTGTCAAAAAACTGGTTTGTTATGATCCGGCTAGGAGGGCTACAACAATGGAGCTACTCCATGACAAGTACTTTATTGAAGAACCTCTTCCTGTTCCTGTTTCTGAGTTGCGAGTTCCTTTGACCAGAAATACAGAAGACGAGGATTCTGTTGGTGGGTGGCAGGATTACAATGACATGGGTTCTGATTCTGATTTTGATGACTTTGGCCCTGTGAATTTCACCAGAACTGGTACCGGTTTCTCCATACAGTTTCCTTGA 1386 0.4394 MATERQSKSWSIHTRSEIIAKYQIMERIGSGAYADVYRGRRLSDDLTVALKEIHDYQSAFREIETLQMLQGSPNVVVLHEYFWREDEDAVIVLEYLTTDLSTVISNAAKEGIPLPVGEIKRWMIQILSGLDSCHRNMIVHRDLKPSNLLISDSGILKLADFGQARILTEHGFDAFEENPPPCENDSSNNESSLHVRCENQEQGSSHEEYIGVSDELKTKRSADDVDKDTNILDGNTSCLATCTTSDMDNDPMRTSFSYEATEGEDRESGGFTSCVGTRWFRAPELLYGSINYGLEIDLWSLGCIFAELLTLKPLFPGTADIDQLSRIINVLGNLDERAWSDCSKLPDYGIISFSKVENPAGVEACLPNRSPDEVSLVKKLVCYDPARRATTMELLHDKYFIEEPLPVPVSELRVPLTRNTEDEDSVGGWQDYNDMGSDSDFDDFGPVNFTRTGTGFSIQFP* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0408 461 MobiDBLite consensus disorder prediction 181 199 - -
Tpr3g0408 461 ProSiteProfiles Protein kinase domain profile. 22 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g0408 461 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Tpr3g0408 461 Gene3D Transferase(Phosphotransferase) domain 1 264 403 - -
Tpr3g0408 461 PANTHER CELL DIVISION PROTEIN KINASE 13 416 - -
Tpr3g0408 461 SUPERFAMILY Protein kinase-like (PK-like) 15 406 IPR011009 -
Tpr3g0408 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Tpr3g0408 461 SMART serkin_6 22 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g0408 461 Pfam Protein kinase domain 268 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g0408 461 Pfam Protein kinase domain 22 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g0408 461 Gene3D Transferase(Phosphotransferase) domain 1 10 209 - -
Tpr3g0408 461 MobiDBLite consensus disorder prediction 179 208 - -
Tpr3g0408 461 PANTHER CYCLIN-DEPENDENT KINASE 10 13 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0408 Tpr-Chr3 4333393 4335515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0408 4 461 Core Cell Cycle Gene Families AT4G28980 62.264 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Tpr3g0408 Pkinase 1.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0408 - - mtr:MTR_8g103240 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0408 3 4333393 4335515 Tpr3g0408 3 4333393 4335515 ECH
Tpr3g0408 3 4333393 4335515 Tpr5g0067 5 1070970 1073444 PCT