Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0398 ATGTCATCTTCATTCTCTATCTTCCCATCACTTCAAAACCCTAACTTGGACCATGCCCATTTCTTCAATCCCATCAAATTCCCCAATTTCCATTTCAATTCAACAAGACTCACTTCACCACCACGCACTCGCCCCAACTTCCCCCAACTCTACAAAACTTCTTCAACTCTTCGCCGTAGAATCCCCTGCAATAAAGCTTTGAAGGATTCCGGTGGTGATGGTGGCGGTGGAGATGGTGGTGGTGACCGTGAGGTGGAGAAGGAAAATGGGTCGTCGGGACCTTTTCCAGGTTGGTTGAATTTCACTTCTGATGACGCAAAAACGGTGTTTGCTACTCTTGCAATATCGCTTGCATTTCGTACATTCATTGCTGAACCTAGGTTCATTCCTTCCTTGTCAATGTATCCTACTTATGATGTTGGAGATCGAATTGTTGCTGAAAAGGTTTCATACTATTTTAGAAAGCCGTGTGCAAATGATATTGTGATATTTAAAAGCCCTCCAGTCCTTCAAGAAGTTGGATACACTGATAATGACGTTTTCATTAAACGTGTTGTTGCAAAGGAAGGAGATGTCGTAGAGGTTCGTAATGGGCATCTTGTAGTTAATGGGGTTGAGAGGGACGAGAAATTTATCAATGAACCACCGAAGTATGAGATGAAACCCACACGTGTGCCAGAGAACTTTGTTTTTGTGATGGGAGACAACCGCAATAACAGCTATGACTCACATGTGTGGGGTCCCTTGCCTGCCAAGAATATCATAGGTAGATCAGTATTCCGCTATTGGCCACCAAATAGAATTGGCAACACAGTTGCTAAGGGAGGGTGCCCTGTTGAAACCAAGCCGGAGACAACTACTACTACTAGTAGTAGTAGTAGTAGTACTACTCTAGCATCTCAATGA 906 0.4371 MSSSFSIFPSLQNPNLDHAHFFNPIKFPNFHFNSTRLTSPPRTRPNFPQLYKTSSTLRRRIPCNKALKDSGGDGGGGDGGGDREVEKENGSSGPFPGWLNFTSDDAKTVFATLAISLAFRTFIAEPRFIPSLSMYPTYDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDNDVFIKRVVAKEGDVVEVRNGHLVVNGVERDEKFINEPPKYEMKPTRVPENFVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIGNTVAKGGCPVETKPETTTTTSSSSSSTTLASQ* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0398 301 MobiDBLite consensus disorder prediction 64 92 - -
Tpr3g0398 301 PRINTS Bacterial leader peptidase 1 (S26A) family signature 122 138 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tpr3g0398 301 PRINTS Bacterial leader peptidase 1 (S26A) family signature 181 193 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tpr3g0398 301 PRINTS Bacterial leader peptidase 1 (S26A) family signature 225 244 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tpr3g0398 301 MobiDBLite consensus disorder prediction 281 301 - -
Tpr3g0398 301 ProSitePatterns Signal peptidases I signature 3. 230 243 IPR019758 GO:0004252|GO:0016021
Tpr3g0398 301 Gene3D Umud Fragment, subunit A 119 275 - -
Tpr3g0398 301 MobiDBLite consensus disorder prediction 275 301 - -
Tpr3g0398 301 Pfam Signal peptidase, peptidase S26 106 263 IPR019533 GO:0004252|GO:0006465
Tpr3g0398 301 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 60 273 - -
Tpr3g0398 301 SUPERFAMILY LexA/Signal peptidase 120 271 IPR036286 -
Tpr3g0398 301 CDD S26_SPase_I 125 257 IPR019533 GO:0004252|GO:0006465
Tpr3g0398 301 PANTHER SIGNAL PEPTIDASE I 60 273 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tpr3g0398 301 TIGRFAM sigpep_I_bact: signal peptidase I 107 265 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0398 Tpr-Chr3 4268946 4272322 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0398 134 264 MADS-box Gene Family AT1G29960 33.333 1.11e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0398 K03100 - gmx:100815810 372.859