Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0386 ATGAGTACTGCCTCTTCTAATGGCGCACCCTCCCTCACCAACGTCCCTATCATCAAGTTCACAAAGCTATTCATTAATGGAGATTTTGTTGATTCAGTTTCAGGGAAGACATTTGAGACAATAGATCCAAGAACAGGAGAAGTTATAGCAAGGGTTAGTGAAGGAACCAAAGAAGACATTGATATTGCTGTAAAGGCAGCACGTTACGCATTTGATTTTGGTCCATGGCCTCGCCTGCCTGGTGTTGAGAGAGCAAAACTTATGATGAAATTTGCGGACCTAATTGAGCAAAACACAGAAGAACTAGCAGCACTAGATGCCATTGATGCAGGAAAGTTGTACCATTTGTGTAAGGCAATAGACATTCCCTCTGCAGCAAATACACTACGTTACTATGCAGGTGCAGCTGATAAAATTCATGGTGAGGTATTAAAAGCTTCAAGGGAGTTACATGCTTATACATTGTTGGAACCAATTGGTGTTGTTGGACATATAATTCCATGGAACTTTCCCACTGCTATGTTCTTCATCAAGGTTGCCCCTTCTTTAGCTGCTGGCTGCACCATGGTCCTCAAACCTGCTGAACAAACACCTCTCTCTGCTTTGTTTTATGCTCATCTTGCTAAATTGGCTGGAATCCCAGATGGAGTGATCAATGTAGTACCCGGATTTGGACCAATTGCTGGTGCTGCTGTTAGCTCACACATGGACATTGATGCGGTAAGTTTTACTGGTTCAACACAAACTGGACGTAAGATAATGGAAGCTGCAGCTAAGAGTAACTTAAAACATGTTTCACTTGAATTAGGAGGAAAGTCACCACTCATAATTTTTGATGATGCTGATATTGAAAAAGCTACTGAACTTGCTCTATTAGGCATTCTATTTAACAAGGGAGAAGTGTGTGTTGCAAGTTCACGTGTGTTTGTTCAAGAAGGGATCTATCATGAATTTGAGAAAAAATTGGTAGAAAAAGCAAAAACTTGGGTCGTTGGTGACCCTTTTGATCCTAATGTTCAGCAAGGGCCTCAAGTTGACAAGAAGCAATTTGAAAAAATTCTTTCGTATATAGAGCATGGGAAGAAAGAAGGAGCTACCCTTTTGACTGGGGGCAAAACAGTGGGAAACAAGGGATACTACATTGAGCCAACAATTTTCTCTAATATAAAGGATGATATGCTTATAGCACAAGATGAAATATTTGGTCCTGTGATGGCACTGAACAAGTTTAAGACTGTTGAAGAAGCAATTAAGAGTGCAAATAATACAAGATATGGGTTAGCAGCAGGTATTGTGACAAAGAATTTGGATATAGCAAACACTATGTCAAGATCCATTCGTGCAGGCACTATTTGGATAAACTGTTATTTTGCTTTTGGAGATGATATTCCATTTGGAGGATATAAAATGAGTGGTTTTGGTAAAGATCATGGATTACAAGCCCTTCAAAAATATCTACAAGTTAAATCTGTTGTTACTCCAATTTATAATTCTCCATGGCTCTAA 1506 0.3944 MSTASSNGAPSLTNVPIIKFTKLFINGDFVDSVSGKTFETIDPRTGEVIARVSEGTKEDIDIAVKAARYAFDFGPWPRLPGVERAKLMMKFADLIEQNTEELAALDAIDAGKLYHLCKAIDIPSAANTLRYYAGAADKIHGEVLKASRELHAYTLLEPIGVVGHIIPWNFPTAMFFIKVAPSLAAGCTMVLKPAEQTPLSALFYAHLAKLAGIPDGVINVVPGFGPIAGAAVSSHMDIDAVSFTGSTQTGRKIMEAAAKSNLKHVSLELGGKSPLIIFDDADIEKATELALLGILFNKGEVCVASSRVFVQEGIYHEFEKKLVEKAKTWVVGDPFDPNVQQGPQVDKKQFEKILSYIEHGKKEGATLLTGGKTVGNKGYYIEPTIFSNIKDDMLIAQDEIFGPVMALNKFKTVEEAIKSANNTRYGLAAGIVTKNLDIANTMSRSIRAGTIWINCYFAFGDDIPFGGYKMSGFGKDHGLQALQKYLQVKSVVTPIYNSPWL* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0386 501 SUPERFAMILY ALDH-like 15 497 IPR016161 GO:0016491
Tpr3g0386 501 Pfam Aldehyde dehydrogenase family 29 491 IPR015590 GO:0016491
Tpr3g0386 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 489 IPR016162 GO:0016491
Tpr3g0386 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 271 460 IPR016163 GO:0016620
Tpr3g0386 501 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 295 306 IPR016160 GO:0016491
Tpr3g0386 501 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 267 274 IPR029510 GO:0016491
Tpr3g0386 501 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 4 501 - -
Tpr3g0386 501 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 4 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0386 Tpr-Chr3 4150117 4155144 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0386 1 501 Aldehyde Dehydrogenase Gene Family AT3G24503 70.518 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0386 K12355 - gmx:100811540 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0386 3 4150117 4155144 Tpr3g0386 3 4150117 4155144 ECH
Tpr3g0386 3 4150117 4155144 Tpr5g0030 5 437198 443129 PCT