Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0380 ATGAGTCGAATAAAGGAAGATGAGAAAAATGAACGAATTATTCGAGGTCTTCTCAAACTGACACCGAATAGAAGATGCATTAACTGCAATAGCATGGGACCACAATATGTATGCACAAATTTCTGGACGTTTGTTTGCACAAACTGCAGTGGAATACACCGGGAATTTACTCATCGAGTAAAATCAATATCCATGGCTAAATTTAGTGCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAAAGAAATATTTTTTAAAGAATGGGATCCACAAAGTAATTCTTTACCTGATAGCAGTAATGTTGACAGGCTACGGGACTTTATCAAGCATGTTTATGTGGATAGGAGATTCACTGGCGAGAGGTCCTATGATAAACCTCCAAGAGTAAAGGGCGACAAGGATGATTCCTATGAAAACAGGAGGCTGGAGACGTACCAGGGAGGACCTAAAAGCCCTCCGTATGAGGACACATATGAACGCCGTTATAGTGACAGATCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGGAATTATGCCGATCATAAGAGAAGCCCTGGTCGCCCTACAATAATTAATGATTGGCGTCGTGAAGATAGATTTGGGGGTGGACAGAAATTTGAAGATCGTAGAATATCCGATGGAGGTAATAAGATGGAAAGCCAATCTCCCGAGCGAGCCAAAGACCTGGATTCTTCAAGCCCACCACCTGTTGTCCGACCTGTTAGAGAAATTCTGGGAGAAAATGTTGTACCTCTACGAATTAGTGAACCTCCAAAAGCAAACAGTGGACAGGCTGCTAATGGCCCAGCACTCACACAGAGAACGGCATCTTCCAGTAGCTTGGCATCCAGCAATGGAACCCCAGCAGAAGTTAAGCTTGAGACTATCAGGAGCCTTATTGATTTTGATGATAATCCTGAACCACCTATTGCTCCAGCAATTCCTCAAGCCACACAAACTACCGCGGCTCAACTTGTGAATCCAACAAATTCTGGTGATAACAATTGGGCCTCCTTTGATGTTGCACCCGAGGTAAAAGTATCACAGGGTCATTCAAATGTAAATTCACTTGATTCTATGCTGTCCCAGTTGTCAGTTCCATCATCTTCACATGCTCAAGTTTCTGGAGCCCAAGGTGGGCCTTTGGCGGGATCAGCTATTAATGCTACTGCTGGAGGAGCTCCAACTGTGAGCAGCTTCGCAACTTTCCCAGCCAGTGTTGCTTCATTAACATCTGGATTGACAACAGCATCACCTTTCAATAACACAGGTTCGTGGTCTAGTTTGCAATATCAGCAACCGCAACCGTTGTTCACATCTACTGTTGGTCAGCCTACTATTCAACAATCTACACTACCAGTTGGTGGAGCTTTGACTAATCAGGGGCATCCAGTGACACATGTGTCAAAGGTTGTCGATGAAGAAAAGTCTAGTGTTGCTTCACAAAATTCTACTGTAAACATAAAACCAAGTGGAAGAAATGAACTTCCTGAGGATCTATTCGCTGTAAACTATTCATCTTTTCCTGCTCCAGTCCCAGGCTGGCAAATGGGTGCACCGCCTGGCATGGGTGTCTCCGTTCATTATAATAATGTGATGTCCGTGCCAAGTTTCCCACAACCATCTCAATCTACAAATCCATTTGATGTGATCAACGAAACAACTTCAGTTCAAGCCCCAACTTTTCCTTCTATGGTATCTTTGCAAGGTGCTCTGCCTGGTGTAACACCTTCAGCTACAGTGCACCCTTCAAACATGGGTAATCAGTCTTTTGCATGGAATCCACCCTCCTCGTTATCGTATGCACCAATGCCGCCTCCACAAGCACAAACTCTTGCCTCTGCAACAGGACCAAGGGCATTCATGGAGCAACAAATGCCAAATAACATGCCATTGCCAAGGCATCAAGGAGGTGGGACTTTTGGAACCGAGGGAACTGCTTTTGGCTTCTCTAATATAGATCAGAAGCTGAATGGTAGGTTGCCAGCCTCTGCTACCCTAAACCCCTTCCCTACAGGAGGTAATCCGTTCGGATGA 2058 0.447 MSRIKEDEKNERIIRGLLKLTPNRRCINCNSMGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFSAQEVSALQEGGNQRAKEIFFKEWDPQSNSLPDSSNVDRLRDFIKHVYVDRRFTGERSYDKPPRVKGDKDDSYENRRLETYQGGPKSPPYEDTYERRYSDRSSPGGRSPGYDQERNYADHKRSPGRPTIINDWRREDRFGGGQKFEDRRISDGGNKMESQSPERAKDLDSSSPPPVVRPVREILGENVVPLRISEPPKANSGQAANGPALTQRTASSSSLASSNGTPAEVKLETIRSLIDFDDNPEPPIAPAIPQATQTTAAQLVNPTNSGDNNWASFDVAPEVKVSQGHSNVNSLDSMLSQLSVPSSSHAQVSGAQGGPLAGSAINATAGGAPTVSSFATFPASVASLTSGLTTASPFNNTGSWSSLQYQQPQPLFTSTVGQPTIQQSTLPVGGALTNQGHPVTHVSKVVDEEKSSVASQNSTVNIKPSGRNELPEDLFAVNYSSFPAPVPGWQMGAPPGMGVSVHYNNVMSVPSFPQPSQSTNPFDVINETTSVQAPTFPSMVSLQGALPGVTPSATVHPSNMGNQSFAWNPPSSLSYAPMPPPQAQTLASATGPRAFMEQQMPNNMPLPRHQGGGTFGTEGTAFGFSNIDQKLNGRLPASATLNPFPTGGNPFG* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0380 685 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Tpr3g0380 685 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Tpr3g0380 685 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Tpr3g0380 685 PANTHER ARF GTPASE ACTIVATOR 2 685 - -
Tpr3g0380 685 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Tpr3g0380 685 MobiDBLite consensus disorder prediction 264 296 - -
Tpr3g0380 685 MobiDBLite consensus disorder prediction 267 296 - -
Tpr3g0380 685 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Tpr3g0380 685 MobiDBLite consensus disorder prediction 181 233 - -
Tpr3g0380 685 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Tpr3g0380 685 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Tpr3g0380 685 MobiDBLite consensus disorder prediction 126 250 - -
Tpr3g0380 685 MobiDBLite consensus disorder prediction 126 145 - -
Tpr3g0380 685 PANTHER ARFGAP/RECO-RELATED 2 685 IPR044820 GO:0005096
Tpr3g0380 685 CDD ArfGap_AGFG 11 121 - -
Tpr3g0380 685 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0380 Tpr-Chr3 4095924 4103970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0380 11 121 C2H2 Transcription Factor Family AT4G21160 33.333 2.73e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0380 - - gmx:100815114 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0380 3 4095924 4103970 Tpr3g0380 3 4095924 4103970 ECH